{
    "type": "genome",
    "identifier": "GCF_900104515.1",
    "organism": "Paracidovorax cattleyae",
    "title": "Paracidovorax cattleyae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900104515.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04489708",
        "wgs_master": "FNJL00000000.1",
        "refseq_category": "reference genome",
        "taxid": "80868",
        "species_taxid": "80868",
        "organism_name": "Paracidovorax cattleyae",
        "infraspecific_name": "strain=DSM 17101",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/21",
        "asm_name": "IMG-taxon 2634166355 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900104515.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/104/515/GCF_900104515.1_IMG-taxon_2634166355_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5609245",
        "genome_size_ungapped": "5607559",
        "gc_percent": "68.500000",
        "replicon_count": "0",
        "scaffold_count": "93",
        "contig_count": "93",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900104515.1-RS_2024_07_01",
        "annotation_date": "2024-07-01",
        "total_gene_count": "5268",
        "protein_coding_gene_count": "5062",
        "non_coding_gene_count": "49",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-21",
    "dateModified": "2016-10-21",
    "datePublished": "2016-10-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paracidovorax cattleyae"
        ],
        "sample_taxid": [
            "80868"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.531 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5609245",
        "Number of Sequences": "93",
        "Longest Sequences (bp)": "330615",
        "N50 (bp)": "143183",
        "Gap Ratio (%)": "0.030058",
        "GCcontent (%)": "68.6",
        "Number of CDSs": "5083",
        "Average Protein Length": "326.2",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "4",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Acidovorax cattleyae",
                "strain": "strain=DSM 17101",
                "accession": "GCA_900104515.1",
                "taxid": 80868,
                "species_taxid": 80868,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1813,
                "total_fragments": 1821,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Acidovorax oryzae",
                "strain": "strain=ATCC 19882",
                "accession": "GCA_000687165.1",
                "taxid": 862720,
                "species_taxid": 862720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.2326,
                "matched_fragments": 1504,
                "total_fragments": 1821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax avenae subsp. avenae",
                "strain": "strain=ATCC 19860",
                "accession": "GCA_000176855.2",
                "taxid": 80870,
                "species_taxid": 80867,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 93.127,
                "matched_fragments": 1551,
                "total_fragments": 1821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax citrulli",
                "strain": "strain=DSM 17060",
                "accession": "GCA_900100305.1",
                "taxid": 80869,
                "species_taxid": 80869,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.3924,
                "matched_fragments": 1350,
                "total_fragments": 1821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax konjaci",
                "strain": "strain=DSM 7481",
                "accession": "GCA_900112675.1",
                "taxid": 32040,
                "species_taxid": 32040,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6981,
                "matched_fragments": 1267,
                "total_fragments": 1821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax anthurii",
                "strain": "strain=CFPB 3232",
                "accession": "GCA_003269065.1",
                "taxid": 78229,
                "species_taxid": 78229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6753,
                "matched_fragments": 1195,
                "total_fragments": 1821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax facilis",
                "strain": "strain=DSM 649",
                "accession": "GCA_023913775.1",
                "taxid": 12917,
                "species_taxid": 12917,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8331,
                "matched_fragments": 813,
                "total_fragments": 1821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax radicis",
                "strain": "strain=N35",
                "accession": "GCA_000204195.2",
                "taxid": 758826,
                "species_taxid": 758826,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7702,
                "matched_fragments": 863,
                "total_fragments": 1821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xylophilus ampelinus",
                "strain": "strain=CFBP 1192",
                "accession": "GCA_024832295.1",
                "taxid": 54067,
                "species_taxid": 54067,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.404,
                "matched_fragments": 669,
                "total_fragments": 1821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga crocea",
                "strain": "strain=BA0156",
                "accession": "GCA_011388215.1",
                "taxid": 2716225,
                "species_taxid": 2716225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3501,
                "matched_fragments": 678,
                "total_fragments": 1821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter humi",
                "strain": "strain=18x22-1",
                "accession": "GCA_004681975.1",
                "taxid": 2530451,
                "species_taxid": 2530451,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2794,
                "matched_fragments": 668,
                "total_fragments": 1821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Diaphorobacter caeni",
                "strain": "strain=NR2-3-3-1",
                "accession": "GCA_015354245.1",
                "taxid": 2784387,
                "species_taxid": 2784387,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.001,
                "matched_fragments": 744,
                "total_fragments": 1821,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900104515.1",
                "gtdb_species": "s__Acidovorax_A cattleyae",
                "ani": 100.0,
                "matched_fragments": 1814,
                "total_fragments": 1821,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.69",
                "min_intra_species_ani": "99.69",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000687165.1",
                "gtdb_species": "s__Acidovorax_A oryzae",
                "ani": 93.2094,
                "matched_fragments": 1506,
                "total_fragments": 1821,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A",
                "ani_circumscription_radius": 95.2137,
                "mean_intra_species_ani": "98.08",
                "min_intra_species_ani": "98.08",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000176855.2",
                "gtdb_species": "s__Acidovorax_A avenae",
                "ani": 93.1268,
                "matched_fragments": 1551,
                "total_fragments": 1821,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A",
                "ani_circumscription_radius": 95.2137,
                "mean_intra_species_ani": "96.92",
                "min_intra_species_ani": "95.92",
                "mean_intra_species_af": "0.74",
                "min_intra_species_af": "0.51",
                "num_clustered_genomes": 18,
                "status": "-"
            },
            {
                "accession": "GCF_900100305.1",
                "gtdb_species": "s__Acidovorax_A citrulli",
                "ani": 92.3791,
                "matched_fragments": 1351,
                "total_fragments": 1821,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "99.27",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCA_002397315.1",
                "gtdb_species": "s__Acidovorax_A sp002397315",
                "ani": 88.4792,
                "matched_fragments": 1294,
                "total_fragments": 1821,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003269065.1",
                "gtdb_species": "s__Acidovorax_A anthurii",
                "ani": 85.6585,
                "matched_fragments": 1198,
                "total_fragments": 1821,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Paracidovorax",
        "cattleyae"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}