{ "type": "genome", "identifier": "GCF_900104525.1", "organism": "Pedococcus dokdonensis", "title": "Pedococcus dokdonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900104525.1", "bioproject": "PRJNA224116", "biosample": "SAMN04489867", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "443156", "species_taxid": "443156", "organism_name": "Pedococcus dokdonensis", "infraspecific_name": "strain=DSM 22329", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/20", "asm_name": "IMG-taxon 2634166372 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900104525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/104/525/GCF_900104525.1_IMG-taxon_2634166372_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3942164", "genome_size_ungapped": "3942064", "gc_percent": "71.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900104525.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3756", "protein_coding_gene_count": "3653", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-20", "dateModified": "2016-10-20", "datePublished": "2016-10-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Pedococcus dokdonensis" ], "sample_taxid": [ "443156" ], 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{ "organism_name": "Janibacter melonis", "strain": "strain=NBRC107855", "accession": "GCA_020567375.1", "taxid": 262209, "species_taxid": 262209, "relation_to_type": "type", "validated": true, "ani": 79.0993, "matched_fragments": 491, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter terrae", "strain": "strain=NBRC 107853", "accession": "GCA_001591405.1", "taxid": 103817, "species_taxid": 103817, "relation_to_type": "type", "validated": true, "ani": 79.0, "matched_fragments": 467, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Intrasporangium chromatireducens", "strain": "strain=Q5-1", "accession": "GCA_000576575.1", "taxid": 1386088, "species_taxid": 1386088, "relation_to_type": "type", "validated": true, "ani": 78.9886, "matched_fragments": 468, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium sediminis", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Pedococcus", "dokdonensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }