{
    "type": "genome",
    "identifier": "GCF_900104635.1",
    "organism": "Coprococcus phoceensis",
    "title": "Coprococcus phoceensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "URMITE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900104635.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA4519291",
        "wgs_master": "FNWC00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1870993",
        "species_taxid": "1870993",
        "organism_name": "Coprococcus phoceensis",
        "infraspecific_name": "strain=Marseille-P3062T",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/27",
        "asm_name": "PRJEB16356",
        "asm_submitter": "URMITE",
        "gbrs_paired_asm": "GCA_900104635.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/104/635/GCF_900104635.1_PRJEB16356",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3601259",
        "genome_size_ungapped": "3601259",
        "gc_percent": "40.000000",
        "replicon_count": "0",
        "scaffold_count": "7",
        "contig_count": "7",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900104635.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "3543",
        "protein_coding_gene_count": "3390",
        "non_coding_gene_count": "71",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-27",
    "dateModified": "2016-10-27",
    "datePublished": "2016-10-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Coprococcus phoceensis"
        ],
        "sample_taxid": [
            "1870993"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.006 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3601259",
        "Number of Sequences": "7",
        "Longest Sequences (bp)": "2878400",
        "N50 (bp)": "2878400",
        "Gap Ratio (%)": "0.000028",
        "GCcontent (%)": "40.2",
        "Number of CDSs": "3501",
        "Average Protein Length": "310.4",
        "Coding Ratio (%)": "90.5",
        "Number of rRNAs": "5",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Coprococcus phoceensis",
                "strain": "strain=Marseille-P3062",
                "accession": "GCA_900104635.1",
                "taxid": 1870993,
                "species_taxid": 1870993,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1196,
                "total_fragments": 1196,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Coprococcus comes",
                "strain": "strain=ATCC 27758",
                "accession": "GCA_025149785.1",
                "taxid": 410072,
                "species_taxid": 410072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1143,
                "matched_fragments": 188,
                "total_fragments": 1196,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea formicigenerans",
                "strain": "strain=ATCC 27755",
                "accession": "GCA_025150245.1",
                "taxid": 39486,
                "species_taxid": 39486,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.5975,
                "matched_fragments": 176,
                "total_fragments": 1196,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=JCM6515",
                "accession": "GCA_008121495.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.9013,
                "matched_fragments": 231,
                "total_fragments": 1196,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_009831375.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.623,
                "matched_fragments": 223,
                "total_fragments": 1196,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_002959615.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.5872,
                "matched_fragments": 222,
                "total_fragments": 1196,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_000169475.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.4008,
                "matched_fragments": 220,
                "total_fragments": 1196,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia hansenii",
                "strain": "strain=DSM 20583",
                "accession": "GCA_002222595.2",
                "taxid": 1322,
                "species_taxid": 1322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2453,
                "matched_fragments": 123,
                "total_fragments": 1196,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_025152275.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1664,
                "matched_fragments": 204,
                "total_fragments": 1196,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalimonas umbilicata",
                "strain": "strain=EGH7",
                "accession": "GCA_003402615.1",
                "taxid": 1912855,
                "species_taxid": 1912855,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1134,
                "matched_fragments": 205,
                "total_fragments": 1196,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalimonas umbilicata",
                "strain": "strain=DSM 103426",
                "accession": "GCA_004346095.1",
                "taxid": 1912855,
                "species_taxid": 1912855,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7451,
                "matched_fragments": 198,
                "total_fragments": 1196,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mediterraneibacter butyricigenes",
                "strain": "strain=KCTC 15684",
                "accession": "GCA_003574295.1",
                "taxid": 2316025,
                "species_taxid": 2316025,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3989,
                "matched_fragments": 127,
                "total_fragments": 1196,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalicatena faecalis",
                "strain": "strain=AGMB00832",
                "accession": "GCA_012524165.2",
                "taxid": 2726362,
                "species_taxid": 2726362,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3983,
                "matched_fragments": 150,
                "total_fragments": 1196,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea longicatena",
                "strain": "strain=DSM 13814",
                "accession": "GCA_025150085.1",
                "taxid": 88431,
                "species_taxid": 88431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0068,
                "matched_fragments": 150,
                "total_fragments": 1196,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea longicatena",
                "strain": "strain=DSM 13814",
                "accession": "GCA_000154065.1",
                "taxid": 88431,
                "species_taxid": 88431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7647,
                "matched_fragments": 146,
                "total_fragments": 1196,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bariatricus massiliensis",
                "strain": "strain=AT12",
                "accession": "GCA_900086725.1",
                "taxid": 1745713,
                "species_taxid": 1745713,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7193,
                "matched_fragments": 107,
                "total_fragments": 1196,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] lactaris",
                "strain": "strain=ATCC 29176",
                "accession": "GCA_000155205.1",
                "taxid": 46228,
                "species_taxid": 46228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5772,
                "matched_fragments": 122,
                "total_fragments": 1196,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] lactaris",
                "strain": "strain=ATCC 29176",
                "accession": "GCA_025152405.1",
                "taxid": 46228,
                "species_taxid": 46228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2946,
                "matched_fragments": 128,
                "total_fragments": 1196,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sellimonas intestinalis",
                "strain": "strain=BR72",
                "accession": "GCA_001280875.1",
                "taxid": 1653434,
                "species_taxid": 1653434,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5462,
                "matched_fragments": 110,
                "total_fragments": 1196,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900104635.1",
                "gtdb_species": "s__Faecalimonas phoceensis",
                "ani": 100.0,
                "matched_fragments": 1196,
                "total_fragments": 1196,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Faecalimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.10",
                "min_intra_species_ani": "95.01",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.60",
                "num_clustered_genomes": 21,
                "status": "conclusive"
            },
            {
                "accession": "GCF_018228665.1",
                "gtdb_species": "s__UBA9414 sp003458885",
                "ani": 81.6099,
                "matched_fragments": 191,
                "total_fragments": 1196,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA9414",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.84",
                "min_intra_species_ani": "97.84",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_008121495.1",
                "gtdb_species": "s__Ruminococcus_B gnavus",
                "ani": 80.8808,
                "matched_fragments": 229,
                "total_fragments": 1196,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Ruminococcus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.58",
                "min_intra_species_ani": "96.13",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.66",
                "num_clustered_genomes": 102,
                "status": "-"
            },
            {
                "accession": "GCA_902381685.1",
                "gtdb_species": "s__Faecalimonas sp000209385",
                "ani": 80.556,
                "matched_fragments": 200,
                "total_fragments": 1196,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Faecalimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.49",
                "min_intra_species_ani": "98.98",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_018365895.1",
                "gtdb_species": "s__UBA9414 sp018365895",
                "ani": 79.8082,
                "matched_fragments": 150,
                "total_fragments": 1196,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA9414",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900551895.1",
                "gtdb_species": "s__Faecalimonas sp900551895",
                "ani": 79.7827,
                "matched_fragments": 151,
                "total_fragments": 1196,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Faecalimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.69",
                "min_intra_species_ani": "98.58",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_004346095.1",
                "gtdb_species": "s__Faecalimonas umbilicata",
                "ani": 79.7522,
                "matched_fragments": 197,
                "total_fragments": 1196,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Faecalimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "97.78",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 20,
                "status": "-"
            },
            {
                "accession": "GCF_012524165.2",
                "gtdb_species": "s__Muricomes sp012524165",
                "ani": 79.3831,
                "matched_fragments": 151,
                "total_fragments": 1196,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Muricomes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017472665.1",
                "gtdb_species": "s__Faecalimonas sp017472665",
                "ani": 78.4712,
                "matched_fragments": 115,
                "total_fragments": 1196,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Faecalimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017416155.1",
                "gtdb_species": "s__Faecalimonas sp017416155",
                "ani": 78.4694,
                "matched_fragments": 130,
                "total_fragments": 1196,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Faecalimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017465565.1",
                "gtdb_species": "s__Faecalimonas sp017465565",
                "ani": 78.4516,
                "matched_fragments": 157,
                "total_fragments": 1196,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Faecalimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900550235.1",
                "gtdb_species": "s__Faecalimonas sp900550235",
                "ani": 78.2399,
                "matched_fragments": 147,
                "total_fragments": 1196,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Faecalimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905197485.1",
                "gtdb_species": "s__Faecalimonas sp900555395",
                "ani": 78.1414,
                "matched_fragments": 152,
                "total_fragments": 1196,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Faecalimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900556835.1",
                "gtdb_species": "s__Faecalimonas sp900556835",
                "ani": 78.0975,
                "matched_fragments": 140,
                "total_fragments": 1196,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Faecalimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900765975.1",
                "gtdb_species": "s__Schaedlerella sp900765975",
                "ani": 77.7976,
                "matched_fragments": 113,
                "total_fragments": 1196,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Schaedlerella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016295505.1",
                "gtdb_species": "s__Dorea_A sp016295505",
                "ani": 76.911,
                "matched_fragments": 98,
                "total_fragments": 1196,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Dorea_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905209865.1",
                "gtdb_species": "s__Mediterraneibacter sp900752395",
                "ani": 76.8064,
                "matched_fragments": 92,
                "total_fragments": 1196,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.117,
        "cell_length": 0.204,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 5.775,
        "genome_size": 3287902.0,
        "gc_content": 42.676,
        "coding_genes": 2985.0,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Coprococcus",
        "phoceensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}