{
    "type": "genome",
    "identifier": "GCF_900104775.1",
    "organism": "Tsukamurella tyrosinosolvens",
    "title": "Tsukamurella tyrosinosolvens",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900104775.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04489793",
        "wgs_master": "FNSA00000000.1",
        "refseq_category": "na",
        "taxid": "57704",
        "species_taxid": "57704",
        "organism_name": "Tsukamurella tyrosinosolvens",
        "infraspecific_name": "strain=DSM 44234",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/22",
        "asm_name": "IMG-taxon 2639762617 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900104775.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/104/775/GCF_900104775.1_IMG-taxon_2639762617_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5281118",
        "genome_size_ungapped": "5281118",
        "gc_percent": "71.000000",
        "replicon_count": "0",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900104775.1-RS_2024_07_25",
        "annotation_date": "2024-07-25",
        "total_gene_count": "5402",
        "protein_coding_gene_count": "5253",
        "non_coding_gene_count": "100",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-22",
    "dateModified": "2016-10-22",
    "datePublished": "2016-10-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Tsukamurella tyrosinosolvens"
        ],
        "sample_taxid": [
            "57704"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.410 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5281118",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "4948325",
        "N50 (bp)": "4948325",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.1",
        "Number of CDSs": "5365",
        "Average Protein Length": "304.8",
        "Coding Ratio (%)": "92.9",
        "Number of rRNAs": "6",
        "Number of tRNAs": "93",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Tsukamurella tyrosinosolvens",
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                "accession": "GCA_900104775.1",
                "taxid": 57704,
                "species_taxid": 57704,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1754,
                "total_fragments": 1759,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Tsukamurella tyrosinosolvens",
                "strain": "strain=CCUG 38499",
                "accession": "GCA_001575155.1",
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                "species_taxid": 57704,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9947,
                "matched_fragments": 1716,
                "total_fragments": 1759,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Tsukamurella tyrosinosolvens",
                "strain": "strain=NCTC13231",
                "accession": "GCA_900637875.1",
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                "species_taxid": 57704,
                "relation_to_type": "type",
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                "ani": 99.9601,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Tsukamurella asaccharolytica",
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                "accession": "GCA_007858435.1",
                "taxid": 2592067,
                "species_taxid": 2592067,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.262,
                "matched_fragments": 1143,
                "total_fragments": 1759,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tsukamurella conjunctivitidis",
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                "accession": "GCA_007858475.1",
                "taxid": 2592068,
                "species_taxid": 2592068,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1350,
                "total_fragments": 1759,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tsukamurella pulmonis",
                "strain": "strain=DSM 44142",
                "accession": "GCA_900103175.1",
                "taxid": 47312,
                "species_taxid": 47312,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.8832,
                "matched_fragments": 1329,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tsukamurella sputi",
                "strain": "strain=HKU70",
                "accession": "GCA_007858445.1",
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                "species_taxid": 2591848,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.3751,
                "matched_fragments": 1312,
                "total_fragments": 1759,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tsukamurella spumae",
                "strain": "strain=DSM 44113",
                "accession": "GCA_012396015.1",
                "taxid": 44753,
                "species_taxid": 44753,
                "relation_to_type": "type",
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                "ani": 86.8308,
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                "total_fragments": 1759,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tsukamurella pseudospumae",
                "strain": "strain=JCM 13375",
                "accession": "GCA_001575205.1",
                "taxid": 239498,
                "species_taxid": 239498,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.8235,
                "matched_fragments": 1274,
                "total_fragments": 1759,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_900104775.1",
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                "matched_fragments": 1753,
                "total_fragments": 1759,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Tsukamurella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.14",
                "min_intra_species_ani": "98.76",
                "mean_intra_species_af": "0.95",
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                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900631615.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Tsukamurella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
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                "total_fragments": 1759,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Tsukamurella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            {
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": 0.336,
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        "range_salinity": null,
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        "bacillus_cell_shape": 1.0,
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        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
        "Tsukamurella",
        "tyrosinosolvens"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}