{
    "type": "genome",
    "identifier": "GCF_900104815.1",
    "organism": "Streptomyces misionensis",
    "title": "Streptomyces misionensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900104815.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04490357",
        "wgs_master": "FNTD00000000.1",
        "refseq_category": "reference genome",
        "taxid": "67331",
        "species_taxid": "67331",
        "organism_name": "Streptomyces misionensis",
        "infraspecific_name": "strain=DSM 40306",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/22",
        "asm_name": "IMG-taxon 2634166373 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900104815.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/104/815/GCF_900104815.1_IMG-taxon_2634166373_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8473721",
        "genome_size_ungapped": "8473721",
        "gc_percent": "72.500000",
        "replicon_count": "0",
        "scaffold_count": "5",
        "contig_count": "5",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900104815.1-RS_2024_04_22",
        "annotation_date": "2024-04-22",
        "total_gene_count": "7685",
        "protein_coding_gene_count": "7435",
        "non_coding_gene_count": "90",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-22",
    "dateModified": "2016-10-22",
    "datePublished": "2016-10-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces misionensis"
        ],
        "sample_taxid": [
            "67331"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "2.253 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 1.04,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8473721",
        "Number of Sequences": "5",
        "Longest Sequences (bp)": "8162950",
        "N50 (bp)": "8162950",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "72.4",
        "Number of CDSs": "7718",
        "Average Protein Length": "324.7",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "18",
        "Number of tRNAs": "93",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptomyces misionensis",
                "strain": "strain=DSM 40306",
                "accession": "GCA_900104815.1",
                "taxid": 67331,
                "species_taxid": 67331,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2817,
                "total_fragments": 2821,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces murinus",
                "strain": "strain=NRRL B-2286",
                "accession": "GCA_002154555.1",
                "taxid": 33900,
                "species_taxid": 33900,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.9212,
                "matched_fragments": 1624,
                "total_fragments": 2821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces griseofuscus",
                "strain": "strain=DSM 40191",
                "accession": "GCA_014673495.1",
                "taxid": 146922,
                "species_taxid": 146922,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.902,
                "matched_fragments": 2096,
                "total_fragments": 2821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces malaysiense",
                "strain": "strain=MUSC 136",
                "accession": "GCA_000980885.2",
                "taxid": 1428626,
                "species_taxid": 1428626,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.877,
                "matched_fragments": 1881,
                "total_fragments": 2821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces griseofuscus",
                "strain": "strain=NRRL B-5429",
                "accession": "GCA_000718315.1",
                "taxid": 146922,
                "species_taxid": 146922,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.8392,
                "matched_fragments": 2054,
                "total_fragments": 2821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces barringtoniae",
                "strain": "strain=JA03",
                "accession": "GCA_020819595.1",
                "taxid": 2892029,
                "species_taxid": 2892029,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.0765,
                "matched_fragments": 1809,
                "total_fragments": 2821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces corchorusii",
                "strain": "strain=DSM 40340",
                "accession": "GCA_001514055.1",
                "taxid": 1903,
                "species_taxid": 1903,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.054,
                "matched_fragments": 1881,
                "total_fragments": 2821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces olivaceoviridis",
                "strain": "strain=JCM 4499",
                "accession": "GCA_014650115.1",
                "taxid": 1921,
                "species_taxid": 1921,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.9868,
                "matched_fragments": 1880,
                "total_fragments": 2821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces canarius",
                "strain": "strain=JCM 4733",
                "accession": "GCA_014650735.1",
                "taxid": 285453,
                "species_taxid": 285453,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.9646,
                "matched_fragments": 1871,
                "total_fragments": 2821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces filipinensis",
                "strain": "strain=JCM 4369",
                "accession": "GCA_014649495.1",
                "taxid": 66887,
                "species_taxid": 66887,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.9623,
                "matched_fragments": 1853,
                "total_fragments": 2821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces spinosus",
                "strain": "strain=SBTS01",
                "accession": "GCA_020400655.1",
                "taxid": 2872623,
                "species_taxid": 2872623,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.8889,
                "matched_fragments": 1833,
                "total_fragments": 2821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces griseosporeus",
                "strain": "strain=JCM 4766",
                "accession": "GCA_014656055.1",
                "taxid": 1910,
                "species_taxid": 1910,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.8453,
                "matched_fragments": 1694,
                "total_fragments": 2821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces shenzhenensis subsp. oryzicola",
                "strain": "strain=W18L9",
                "accession": "GCA_013870495.1",
                "taxid": 2749088,
                "species_taxid": 943815,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.817,
                "matched_fragments": 1321,
                "total_fragments": 2821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces shenzhenensis",
                "strain": "strain=DSM 42034",
                "accession": "GCA_021462265.1",
                "taxid": 943815,
                "species_taxid": 943815,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6004,
                "matched_fragments": 1763,
                "total_fragments": 2821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces griseostramineus",
                "strain": "strain=JCM 4385",
                "accession": "GCA_014649635.1",
                "taxid": 66898,
                "species_taxid": 66898,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 84.3318,
                "matched_fragments": 1592,
                "total_fragments": 2821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces griseostramineus",
                "strain": "strain=CECT 3273",
                "accession": "GCA_014203535.1",
                "taxid": 66898,
                "species_taxid": 66898,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 84.3176,
                "matched_fragments": 1605,
                "total_fragments": 2821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces lomondensis",
                "strain": "strain=DSM 41428",
                "accession": "GCA_021440105.1",
                "taxid": 68229,
                "species_taxid": 68229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2903,
                "matched_fragments": 1605,
                "total_fragments": 2821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces geranii",
                "strain": "strain=A301",
                "accession": "GCA_002954775.1",
                "taxid": 2058923,
                "species_taxid": 2058923,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6496,
                "matched_fragments": 1417,
                "total_fragments": 2821,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 1.04,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900104815.1",
                "gtdb_species": "s__Streptomyces misionensis",
                "ani": 100.0,
                "matched_fragments": 2819,
                "total_fragments": 2821,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.36",
                "min_intra_species_ani": "97.46",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_007896895.1",
                "gtdb_species": "s__Streptomyces misionensis_A",
                "ani": 94.8213,
                "matched_fragments": 2221,
                "total_fragments": 2821,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007679425.1",
                "gtdb_species": "s__Streptomyces incarnatus_A",
                "ani": 90.2649,
                "matched_fragments": 1931,
                "total_fragments": 2821,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.50",
                "min_intra_species_ani": "99.00",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_009650765.1",
                "gtdb_species": "s__Streptomyces sp003259585",
                "ani": 90.1565,
                "matched_fragments": 2012,
                "total_fragments": 2821,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "98.74",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_002154555.1",
                "gtdb_species": "s__Streptomyces murinus",
                "ani": 89.9428,
                "matched_fragments": 1622,
                "total_fragments": 2821,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 97.0065,
                "mean_intra_species_ani": "97.48",
                "min_intra_species_ani": "97.10",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_014673495.1",
                "gtdb_species": "s__Streptomyces griseofuscus",
                "ani": 89.8984,
                "matched_fragments": 2098,
                "total_fragments": 2821,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 97.0065,
                "mean_intra_species_ani": "98.75",
                "min_intra_species_ani": "98.11",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_000980885.2",
                "gtdb_species": "s__Streptomyces malaysiense",
                "ani": 89.859,
                "matched_fragments": 1881,
                "total_fragments": 2821,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014650115.1",
                "gtdb_species": "s__Streptomyces olivaceoviridis",
                "ani": 86.9909,
                "matched_fragments": 1879,
                "total_fragments": 2821,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.78",
                "min_intra_species_ani": "96.54",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_000716535.1",
                "gtdb_species": "s__Streptomyces flaveolus_A",
                "ani": 86.9371,
                "matched_fragments": 1890,
                "total_fragments": 2821,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.26",
                "min_intra_species_ani": "98.84",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_002155905.1",
                "gtdb_species": "s__Streptomyces tricolor",
                "ani": 86.8466,
                "matched_fragments": 1526,
                "total_fragments": 2821,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.81",
                "min_intra_species_ani": "98.00",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_001953885.1",
                "gtdb_species": "s__Streptomyces sp001953885",
                "ani": 86.7398,
                "matched_fragments": 1813,
                "total_fragments": 2821,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013364255.1",
                "gtdb_species": "s__Streptomyces seoulensis_A",
                "ani": 85.0572,
                "matched_fragments": 1718,
                "total_fragments": 2821,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014656055.1",
                "gtdb_species": "s__Streptomyces griseosporeus",
                "ani": 84.8398,
                "matched_fragments": 1695,
                "total_fragments": 2821,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.70",
                "min_intra_species_ani": "98.69",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.201,
        "cell_length": -0.05,
        "doubling_h": 0.103,
        "growth_tmp": 27.0,
        "optimum_tmp": 29.036,
        "optimum_ph": 7.341,
        "genome_size": 5566908.0,
        "gc_content": 71.543,
        "coding_genes": 7141.289,
        "rRNA16S_genes": 6.155,
        "tRNA_genes": 67.804,
        "gram_stain": 1.0,
        "sporulation": 0.958,
        "motility": 0.049,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.005,
        "aerobic_respiration": 0.994,
        "mesophilic_range_tmp": 0.98,
        "thermophilic_range_tmp": 0.019,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.208,
        "coccus_cell_shape": 0.032,
        "filament_cell_shape": 0.582,
        "coccobacillus_cell_shape": 0.098,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.076
    },
    "_genome_taxon": [
        "Streptomyces",
        "misionensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}