{ "type": "genome", "identifier": "GCF_900104945.1", "organism": "Halopseudomonas xinjiangensis", "title": "Halopseudomonas xinjiangensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900104945.1", "bioproject": "PRJNA224116", "biosample": "SAMN05216421", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "487184", "species_taxid": "487184", "organism_name": "Halopseudomonas xinjiangensis", "infraspecific_name": "strain=NRRL B-51270", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/20", "asm_name": "IMG-taxon 2667527388 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900104945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/104/945/GCF_900104945.1_IMG-taxon_2667527388_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3537092", "genome_size_ungapped": "3536992", "gc_percent": "60.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900104945.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3325", "protein_coding_gene_count": "3237", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-20", "dateModified": "2016-10-20", "datePublished": "2016-10-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Halopseudomonas xinjiangensis" ], "sample_taxid": [ "487184" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.995 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3536992", "Number of Sequences": "1", "Longest Sequences (bp)": "3536992", "N50 (bp)": "3536992", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.7", "Number of CDSs": "3280", "Average Protein Length": "326.1", "Coding Ratio (%)": "90.7", "Number of rRNAs": "9", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halopseudomonas bauzanensis", "strain": "strain=DSM 22558", "accession": "GCA_900111225.1", 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"Pseudomonas citronellolis", "strain": "strain=NBRC 103043", "accession": "GCA_002091555.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 78.1882, "matched_fragments": 337, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas yangonensis", "strain": "strain=MY50", "accession": "GCA_009932725.1", "taxid": 2579922, "species_taxid": 2579922, "relation_to_type": "type", "validated": true, "ani": 78.1277, "matched_fragments": 316, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas delhiensis", "strain": "strain=CCM 7361", "accession": "GCA_900099945.1", "taxid": 366289, "species_taxid": 366289, "relation_to_type": "type", "validated": true, "ani": 78.0652, "matched_fragments": 341, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas delhiensis", "strain": "strain=RLD-1", 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