{ "type": "genome", "identifier": "GCF_900105005.1", "organism": "Halopseudomonas litoralis", "title": "Halopseudomonas litoralis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900105005.1", "bioproject": "PRJNA224116", "biosample": "SAMN05216198", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "797277", "species_taxid": "797277", "organism_name": "Halopseudomonas litoralis", "infraspecific_name": "strain=2SM5", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/20", "asm_name": "IMG-taxon 2667527220 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900105005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/105/005/GCF_900105005.1_IMG-taxon_2667527220_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3987942", "genome_size_ungapped": "3987842", "gc_percent": "58.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900105005.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3825", "protein_coding_gene_count": "3683", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-20", "dateModified": "2016-10-20", "datePublished": "2016-10-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Halopseudomonas litoralis" ], "sample_taxid": [ "797277" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.123 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3987842", "Number of Sequences": "1", "Longest Sequences (bp)": "3987842", "N50 (bp)": "3987842", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.5", "Number of CDSs": "3853", "Average Protein Length": "311.3", "Coding Ratio (%)": "90.2", "Number of rRNAs": "12", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halopseudomonas litoralis", "strain": "strain=2SM5", "accession": "GCA_900105005.1", "taxid": 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"organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 77.8992, "matched_fragments": 284, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 77.8228, "matched_fragments": 274, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fragi", "strain": "strain=NRRL B-727", "accession": "GCA_900105835.1", "taxid": 296, "species_taxid": 296, "relation_to_type": "type", "validated": true, "ani": 77.6974, "matched_fragments": 198, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas deceptionensis", "strain": 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