{ "type": "genome", "identifier": "GCF_900105015.1", "organism": "Schaalia meyeri", "title": "Schaalia meyeri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900105015.1", "bioproject": "PRJNA224116", "biosample": "SAMN04489715", "wgs_master": "FNLK00000000.1", "refseq_category": "na", "taxid": "52773", "species_taxid": "52773", "organism_name": "Schaalia meyeri", "infraspecific_name": "strain=DSM 20733", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/22", "asm_name": "IMG-taxon 2634166153 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900105015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/105/015/GCF_900105015.1_IMG-taxon_2634166153_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2026407", "genome_size_ungapped": "2026407", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900105015.1-RS_2024_04_11", "annotation_date": "2024-04-11", "total_gene_count": "1806", "protein_coding_gene_count": "1708", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-22", "dateModified": "2016-10-22", "datePublished": "2016-10-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Schaalia meyeri" ], "sample_taxid": [ "52773" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.565 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2026407", "Number of Sequences": "15", "Longest Sequences (bp)": "459460", "N50 (bp)": "241345", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.6", "Number of CDSs": "1758", "Average Protein Length": "339.9", "Coding Ratio (%)": "88.5", "Number of rRNAs": "7", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Schaalia meyeri", "strain": "strain=DSM 20733", "accession": "GCA_900105015.1", "taxid": 52773, "species_taxid": 52773, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 663, "total_fragments": 667, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Schaalia meyeri", "strain": "strain=FDAARGOS_985", "accession": "GCA_016127995.1", "taxid": 52773, "species_taxid": 52773, "relation_to_type": "type", "validated": true, "ani": 99.9959, "matched_fragments": 653, "total_fragments": 667, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Schaalia hyovaginalis", "strain": "strain=DSM 10695", "accession": "GCA_014208035.1", "taxid": 29316, "species_taxid": 29316, "relation_to_type": "type", "validated": true, "ani": 78.941, "matched_fragments": 190, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schaalia vaccimaxillae", "strain": "strain=DSM 15804", "accession": "GCA_000420425.1", "taxid": 183916, "species_taxid": 183916, "relation_to_type": "type", "validated": true, "ani": 78.9406, "matched_fragments": 102, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces provencensis", "strain": "strain=SN12", "accession": "GCA_900155435.1", "taxid": 1720198, "species_taxid": 1720198, "relation_to_type": "type", "validated": true, "ani": 78.5955, "matched_fragments": 160, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces polynesiensis", "strain": "strain=MS2", "accession": "GCA_000820725.1", "taxid": 1325934, "species_taxid": 1325934, "relation_to_type": "type", "validated": true, "ani": 78.0996, "matched_fragments": 142, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces radicidentis", "strain": "strain=CCUG 36733", "accession": "GCA_001553565.1", "taxid": 111015, "species_taxid": 111015, "relation_to_type": "type", "validated": true, "ani": 77.5783, "matched_fragments": 144, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces denticolens", "strain": "strain=DSM 20671", "accession": "GCA_002072185.1", "taxid": 52767, "species_taxid": 52767, "relation_to_type": "type", "validated": true, "ani": 77.3132, "matched_fragments": 112, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bowdeniella nasicola", "strain": "strain=DSM 19116", "accession": "GCA_001907295.1", "taxid": 208480, "species_taxid": 208480, "relation_to_type": "type", "validated": true, "ani": 77.2686, "matched_fragments": 65, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia soli", "strain": "strain=DSM 21838", "accession": "GCA_002563695.1", "taxid": 638953, "species_taxid": 638953, "relation_to_type": "type", "validated": true, "ani": 77.201, "matched_fragments": 108, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas carbonis", "strain": "strain=CGMCC 1.10786", "accession": "GCA_014636275.1", "taxid": 1386092, "species_taxid": 1386092, "relation_to_type": "type", "validated": true, "ani": 76.6124, "matched_fragments": 89, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Isoptericola sediminis", "strain": "strain=JC619", "accession": "GCA_013085345.1", "taxid": 2733572, "species_taxid": 2733572, "relation_to_type": "type", "validated": true, "ani": 76.5702, "matched_fragments": 85, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas carbonis", "strain": "strain=T26", "accession": "GCA_000767175.1", "taxid": 1386092, "species_taxid": 1386092, "relation_to_type": "type", "validated": true, "ani": 76.5095, "matched_fragments": 84, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida halotolerans", "strain": "strain=DSM 44931", "accession": "GCA_003574835.2", "taxid": 483545, "species_taxid": 483545, "relation_to_type": "type", "validated": true, "ani": 76.4034, "matched_fragments": 69, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia turbata", "strain": "strain=NRRL B-8019", "accession": "GCA_000718325.1", "taxid": 1713, "species_taxid": 1713, "relation_to_type": "type", "validated": true, "ani": 76.3878, "matched_fragments": 81, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia turbata", "strain": "strain=JCM3160", "accession": "GCA_004121315.1", "taxid": 1713, "species_taxid": 1713, "relation_to_type": "type", "validated": true, "ani": 76.3666, "matched_fragments": 82, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium gallinarum", "strain": "strain=Sa1CUA4", "accession": "GCA_014837165.1", "taxid": 2762209, "species_taxid": 2762209, "relation_to_type": "type", "validated": true, "ani": 76.2093, "matched_fragments": 55, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces aurantiacus", "strain": "strain=NRRL ISP-5412", "accession": "GCA_001418335.1", "taxid": 47760, "species_taxid": 47760, "relation_to_type": "type", "validated": true, "ani": 76.0356, "matched_fragments": 64, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 75.6949, "matched_fragments": 54, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900105015.1", "gtdb_species": "s__Pauljensenia meyeri", "ani": 100.0, "matched_fragments": 665, "total_fragments": 667, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.29", "min_intra_species_ani": "98.87", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_000185285.1", "gtdb_species": "s__Pauljensenia sp000185285", "ani": 83.1162, "matched_fragments": 521, "total_fragments": 667, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.02", "min_intra_species_ani": "95.63", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001064145.1", "gtdb_species": "s__Pauljensenia sp001064145", "ani": 82.5444, "matched_fragments": 460, "total_fragments": 667, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001838165.1", "gtdb_species": "s__Pauljensenia sp001838165", "ani": 82.532, "matched_fragments": 470, "total_fragments": 667, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.43", "min_intra_species_ani": "95.77", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_005696695.1", "gtdb_species": "s__Pauljensenia odontolytica_C", "ani": 82.5261, "matched_fragments": 490, "total_fragments": 667, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.76", "min_intra_species_ani": "95.52", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_001072465.1", "gtdb_species": "s__Pauljensenia sp001072465", "ani": 82.4971, "matched_fragments": 479, "total_fragments": 667, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.78", "min_intra_species_ani": "97.78", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018375675.1", "gtdb_species": "s__Pauljensenia sp018375675", "ani": 82.4803, "matched_fragments": 452, "total_fragments": 667, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002847525.1", "gtdb_species": "s__Pauljensenia odontolytica_B", "ani": 82.4497, "matched_fragments": 483, "total_fragments": 667, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.06", "min_intra_species_ani": "96.22", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000466265.1", "gtdb_species": "s__Pauljensenia sp000466265", "ani": 82.3651, "matched_fragments": 438, "total_fragments": 667, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.80", "min_intra_species_ani": "96.80", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000411415.1", "gtdb_species": "s__Pauljensenia sp000411415", "ani": 82.3505, "matched_fragments": 473, "total_fragments": 667, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.95", "min_intra_species_ani": "97.15", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_018382595.1", "gtdb_species": "s__Pauljensenia sp018382595", "ani": 82.3076, "matched_fragments": 429, "total_fragments": 667, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902373545.1", "gtdb_species": "s__Pauljensenia sp902373545", "ani": 81.7451, "matched_fragments": 407, "total_fragments": 667, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.43", "min_intra_species_ani": "97.43", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900556405.1", "gtdb_species": "s__Pauljensenia sp900556405", "ani": 81.1434, "matched_fragments": 307, "total_fragments": 667, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Schaalia", "meyeri" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }