{
    "type": "genome",
    "identifier": "GCF_900105045.1",
    "organism": "Brevibacterium sandarakinum",
    "title": "Brevibacterium sandarakinum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900105045.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04489751",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "629680",
        "species_taxid": "629680",
        "organism_name": "Brevibacterium sandarakinum",
        "infraspecific_name": "strain=DSM 22082",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Chromosome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/20",
        "asm_name": "IMG-taxon 2634166182 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900105045.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/105/045/GCF_900105045.1_IMG-taxon_2634166182_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4441057",
        "genome_size_ungapped": "4440957",
        "gc_percent": "63.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900105045.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "4095",
        "protein_coding_gene_count": "3974",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-20",
    "dateModified": "2016-10-20",
    "datePublished": "2016-10-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Brevibacterium sandarakinum"
        ],
        "sample_taxid": [
            "629680"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.233 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4440957",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4440957",
        "N50 (bp)": "4440957",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.3",
        "Number of CDSs": "4066",
        "Average Protein Length": "324.9",
        "Coding Ratio (%)": "89.2",
        "Number of rRNAs": "9",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Brevibacterium sandarakinum",
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                "accession": "GCA_900105045.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1478,
                "total_fragments": 1480,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Brevibacterium antiquum",
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                "taxid": 234835,
                "species_taxid": 234835,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacterium aurantiacum",
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                "species_taxid": 273384,
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                "validated": true,
                "ani": 87.2593,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacterium zhoupengii",
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                "accession": "GCA_021117425.1",
                "taxid": 2898795,
                "species_taxid": 2898795,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.6763,
                "matched_fragments": 1086,
                "total_fragments": 1480,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacterium marinum",
                "strain": "strain=DSM 18964",
                "accession": "GCA_011927955.1",
                "taxid": 418643,
                "species_taxid": 418643,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9134,
                "matched_fragments": 1085,
                "total_fragments": 1480,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacterium daeguense",
                "strain": "strain=DSM 27938",
                "accession": "GCA_021729135.1",
                "taxid": 909936,
                "species_taxid": 909936,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4766,
                "matched_fragments": 298,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sediminivirga luteola",
                "strain": "strain=CGMCC 1.12785",
                "accession": "GCA_021729215.1",
                "taxid": 1774748,
                "species_taxid": 1774748,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0297,
                "matched_fragments": 173,
                "total_fragments": 1480,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas avistercoris",
                "strain": "strain=Sa3CUA2",
                "accession": "GCA_014836445.1",
                "taxid": 2762242,
                "species_taxid": 2762242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1699,
                "matched_fragments": 118,
                "total_fragments": 1480,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900105045.1",
                "gtdb_species": "s__Brevibacterium sandarakinum",
                "ani": 100.0,
                "matched_fragments": 1480,
                "total_fragments": 1480,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_016107655.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900169065.1",
                "gtdb_species": "s__Brevibacterium aurantiacum",
                "ani": 87.2672,
                "matched_fragments": 1070,
                "total_fragments": 1480,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium",
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                "num_clustered_genomes": 28,
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            },
            {
                "accession": "GCF_007558825.1",
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                "mean_intra_species_ani": "N/A",
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            {
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_900169145.1",
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            },
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                "accession": "GCF_900169365.1",
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            {
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.046,
        "cell_length": 0.041,
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        "bacillus_cell_shape": 0.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
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        "sandarakinum"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}