{
    "type": "genome",
    "identifier": "GCF_900105065.1",
    "organism": "Friedmanniella luteola",
    "title": "Friedmanniella luteola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900105065.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04488543",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "546871",
        "species_taxid": "546871",
        "organism_name": "Friedmanniella luteola",
        "infraspecific_name": "strain=DSM 21741",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Chromosome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/20",
        "asm_name": "IMG-taxon 2630969010 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900105065.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/105/065/GCF_900105065.1_IMG-taxon_2630969010_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4717614",
        "genome_size_ungapped": "4717514",
        "gc_percent": "73.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900105065.1-RS_2024_04_30",
        "annotation_date": "2024-04-30",
        "total_gene_count": "4403",
        "protein_coding_gene_count": "4324",
        "non_coding_gene_count": "57",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-20",
    "dateModified": "2016-10-20",
    "datePublished": "2016-10-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Friedmanniella luteola"
        ],
        "sample_taxid": [
            "546871"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.232 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4717514",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4717514",
        "N50 (bp)": "4717514",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "73.7",
        "Number of CDSs": "4447",
        "Average Protein Length": "320.2",
        "Coding Ratio (%)": "90.6",
        "Number of rRNAs": "6",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Microlunatus sagamiharensis",
                "strain": "strain=DSM 21743",
                "accession": "GCA_900105785.1",
                "taxid": 546874,
                "species_taxid": 546874,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1253,
                "matched_fragments": 794,
                "total_fragments": 1572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microlunatus antarcticus",
                "strain": "strain=DSM 11053",
                "accession": "GCA_014193425.1",
                "taxid": 53388,
                "species_taxid": 53388,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0486,
                "matched_fragments": 720,
                "total_fragments": 1572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microlunatus flavus",
                "strain": "strain=CGMCC 4.6856",
                "accession": "GCA_900110855.1",
                "taxid": 1036181,
                "species_taxid": 1036181,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9255,
                "matched_fragments": 809,
                "total_fragments": 1572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microlunatus kandeliicorticis",
                "strain": "strain=DSM 100723",
                "accession": "GCA_014137855.1",
                "taxid": 1759536,
                "species_taxid": 1759536,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7675,
                "matched_fragments": 668,
                "total_fragments": 1572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microlunatus panaciterrae",
                "strain": "strain=DSM 18662",
                "accession": "GCA_016907535.1",
                "taxid": 400768,
                "species_taxid": 400768,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1336,
                "matched_fragments": 538,
                "total_fragments": 1572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desertihabitans aurantiacus",
                "strain": "strain=CPCC 204711",
                "accession": "GCA_003344635.1",
                "taxid": 2282477,
                "species_taxid": 2282477,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.039,
                "matched_fragments": 532,
                "total_fragments": 1572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microlunatus phosphovorus",
                "strain": "strain=NM-1",
                "accession": "GCA_000270245.1",
                "taxid": 29405,
                "species_taxid": 29405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8245,
                "matched_fragments": 502,
                "total_fragments": 1572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desertihabitans brevis",
                "strain": "strain=16Sb5-5",
                "accession": "GCA_003327535.1",
                "taxid": 2268447,
                "species_taxid": 2268447,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.803,
                "matched_fragments": 631,
                "total_fragments": 1572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Auraticoccus cholistanensis",
                "strain": "strain=F435",
                "accession": "GCA_009742705.1",
                "taxid": 2656650,
                "species_taxid": 2656650,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7108,
                "matched_fragments": 615,
                "total_fragments": 1572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Auraticoccus monumenti",
                "strain": "strain=MON 2.2",
                "accession": "GCA_900101785.1",
                "taxid": 675864,
                "species_taxid": 675864,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7048,
                "matched_fragments": 647,
                "total_fragments": 1572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microlunatus parietis",
                "strain": "strain=DSM 22083",
                "accession": "GCA_013407955.1",
                "taxid": 682979,
                "species_taxid": 682979,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.325,
                "matched_fragments": 627,
                "total_fragments": 1572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microlunatus speluncae",
                "strain": "strain=SYSU K12189",
                "accession": "GCA_009299835.1",
                "taxid": 2594267,
                "species_taxid": 2594267,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2456,
                "matched_fragments": 607,
                "total_fragments": 1572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides panacis",
                "strain": "strain=G188",
                "accession": "GCA_019039255.1",
                "taxid": 2849501,
                "species_taxid": 2849501,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5279,
                "matched_fragments": 501,
                "total_fragments": 1572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides lacusdianchii",
                "strain": "strain=JXJ CY 38",
                "accession": "GCA_020102855.1",
                "taxid": 2783664,
                "species_taxid": 2783664,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2883,
                "matched_fragments": 410,
                "total_fragments": 1572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides hwasunensis",
                "strain": "strain=19197",
                "accession": "GCA_014779665.1",
                "taxid": 397258,
                "species_taxid": 397258,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1131,
                "matched_fragments": 426,
                "total_fragments": 1572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kribbella turkmenica",
                "strain": "strain=16K104",
                "accession": "GCA_004348725.1",
                "taxid": 2530375,
                "species_taxid": 2530375,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0798,
                "matched_fragments": 455,
                "total_fragments": 1572,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900105065.1",
                "gtdb_species": "s__Friedmanniella luteola",
                "ani": 100.0,
                "matched_fragments": 1570,
                "total_fragments": 1572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Friedmanniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_017876495.1",
                "gtdb_species": "s__Friedmanniella capsulata",
                "ani": 87.6723,
                "matched_fragments": 1177,
                "total_fragments": 1572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Friedmanniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900105785.1",
                "gtdb_species": "s__Friedmanniella sagamiharensis",
                "ani": 80.139,
                "matched_fragments": 792,
                "total_fragments": 1572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Friedmanniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016907175.1",
                "gtdb_species": "s__Friedmanniella spumicola",
                "ani": 80.1196,
                "matched_fragments": 795,
                "total_fragments": 1572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Friedmanniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014193425.1",
                "gtdb_species": "s__Friedmanniella antarctica",
                "ani": 80.0901,
                "matched_fragments": 719,
                "total_fragments": 1572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Friedmanniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900110855.1",
                "gtdb_species": "s__Friedmanniella flava",
                "ani": 79.8647,
                "matched_fragments": 818,
                "total_fragments": 1572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Friedmanniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014137855.1",
                "gtdb_species": "s__Friedmanniella_A endophytica",
                "ani": 79.7341,
                "matched_fragments": 673,
                "total_fragments": 1572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Friedmanniella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016907535.1",
                "gtdb_species": "s__Microlunatus_C panaciterrae",
                "ani": 79.115,
                "matched_fragments": 540,
                "total_fragments": 1572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Microlunatus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902805915.1",
                "gtdb_species": "s__CADCUO01 sp902805915",
                "ani": 78.7887,
                "matched_fragments": 415,
                "total_fragments": 1572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__CADCUO01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009299835.1",
                "gtdb_species": "s__Microlunatus_B speluncae",
                "ani": 78.2449,
                "matched_fragments": 607,
                "total_fragments": 1572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Microlunatus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.13,
        "cell_length": 0.13,
        "doubling_h": null,
        "growth_tmp": 26.0,
        "optimum_tmp": 26.0,
        "optimum_ph": 6.85,
        "genome_size": 4717514.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Friedmanniella",
        "luteola"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}