{ "type": "genome", "identifier": "GCF_900105165.1", "organism": "Mucilaginibacter mallensis", "title": "Mucilaginibacter mallensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900105165.1", "bioproject": "PRJNA224116", "biosample": "SAMN05216490", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "652787", "species_taxid": "652787", "organism_name": "Mucilaginibacter mallensis", "infraspecific_name": "strain=MP1X4", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/20", "asm_name": "IMG-taxon 2667528181 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900105165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/105/165/GCF_900105165.1_IMG-taxon_2667528181_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6014056", "genome_size_ungapped": "6013956", "gc_percent": "41.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900105165.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4961", "protein_coding_gene_count": "4893", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-20", "dateModified": "2016-10-20", "datePublished": "2016-10-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter mallensis" ], "sample_taxid": [ "652787" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.698 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6013956", "Number of Sequences": "1", "Longest Sequences (bp)": "6013956", "N50 (bp)": "6013956", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.3", "Number of CDSs": "4858", "Average Protein Length": "359.2", "Coding Ratio (%)": "87.1", "Number of rRNAs": "6", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter mallensis", "strain": "strain=MP1X4", "accession": "GCA_900105165.1", 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter glaciei", "strain": "strain=ZB1P21", "accession": "GCA_014773245.1", "taxid": 2772109, "species_taxid": 2772109, "relation_to_type": "type", "validated": true, "ani": 77.5033, "matched_fragments": 295, "total_fragments": 2004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter roseus", "strain": "strain=LMG 28454", "accession": "GCA_021215455.1", "taxid": 1528868, "species_taxid": 1528868, "relation_to_type": "type", "validated": true, "ani": 77.4857, "matched_fragments": 255, "total_fragments": 2004, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900105165.1", "gtdb_species": "s__Mucilaginibacter mallensis", "ani": 100.0, "matched_fragments": 2003, "total_fragments": 2004, "gtdb_taxonomy": 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