{ "type": "genome", "identifier": "GCF_900105185.1", "organism": "Pseudomonas saponiphila", "title": "Pseudomonas saponiphila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900105185.1", "bioproject": "PRJNA224116", "biosample": "SAMN05216178", "wgs_master": "FNTJ00000000.1", "refseq_category": "reference genome", "taxid": "556534", "species_taxid": "556534", "organism_name": "Pseudomonas saponiphila", "infraspecific_name": "strain=DSM 9751", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/22", "asm_name": "IMG-taxon 2667528183 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900105185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/105/185/GCF_900105185.1_IMG-taxon_2667528183_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7375852", "genome_size_ungapped": "7375852", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900105185.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "7087", "protein_coding_gene_count": "6820", "non_coding_gene_count": "98", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-22", "dateModified": "2016-10-22", "datePublished": "2016-10-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas saponiphila" ], "sample_taxid": [ "556534" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.034 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7375852", "Number of Sequences": "4", "Longest Sequences (bp)": "4645227", "N50 (bp)": "4645227", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.8", "Number of CDSs": "7007", "Average Protein Length": "310.3", "Coding Ratio (%)": "88.4", "Number of rRNAs": "19", "Number of tRNAs": "82", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas protegens", "strain": "strain=CHA0", "accession": "GCA_000397205.1", "taxid": 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587753, "relation_to_type": "type", "validated": true, "ani": 86.4116, "matched_fragments": 1579, "total_fragments": 2456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chlororaphis subsp. piscium", "strain": "strain=DSM 21509", "accession": "GCA_001269555.1", "taxid": 1513890, "species_taxid": 587753, "relation_to_type": "type", "validated": true, "ani": 86.3973, "matched_fragments": 1588, "total_fragments": 2456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chlororaphis subsp. chlororaphis", "strain": "strain=LMG 5004", "accession": "GCA_001269625.1", "taxid": 333, "species_taxid": 587753, "relation_to_type": "type", "validated": true, "ani": 86.3928, "matched_fragments": 1587, "total_fragments": 2456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas batumici", "strain": "strain=UCM B-321", "accession": "GCA_000820515.1", "taxid": 226910, "species_taxid": 226910, 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82.313, "matched_fragments": 1078, "total_fragments": 2456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fragi", "strain": "strain=NRRL B-727", "accession": "GCA_900105835.1", "taxid": 296, "species_taxid": 296, "relation_to_type": "type", "validated": true, "ani": 82.2146, "matched_fragments": 974, "total_fragments": 2456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas capeferrum", "strain": "strain=WCS358", "accession": "GCA_022548835.1", "taxid": 1495066, "species_taxid": 1495066, "relation_to_type": "type", "validated": true, "ani": 81.7172, "matched_fragments": 973, "total_fragments": 2456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NCTC10367", "accession": "GCA_900455475.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 80.9614, "matched_fragments": 839, "total_fragments": 2456, 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