{ "type": "genome", "identifier": "GCF_900105405.1", "organism": "Gardnerella vaginalis", "title": "Gardnerella vaginalis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900105405.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488545", "wgs_master": "na", "refseq_category": "na", "taxid": "2702", "species_taxid": "2702", "organism_name": "Gardnerella vaginalis", "infraspecific_name": "strain=DSM 4944", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2630968301 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900105405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/105/405/GCF_900105405.1_IMG-taxon_2630968301_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1684415", "genome_size_ungapped": "1684315", "gc_percent": "41.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-12", "total_gene_count": "1338", "protein_coding_gene_count": "1266", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Gardnerella vaginalis" ], "sample_taxid": [ "2702" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.475 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1684315", "Number of Sequences": "1", "Longest Sequences (bp)": "1684315", "N50 (bp)": "1684315", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.3", "Number of CDSs": "1308", "Average Protein Length": "371.0", "Coding Ratio (%)": "86.4", "Number of rRNAs": "6", "Number of tRNAs": "45", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gardnerella vaginalis", "strain": "strain=DSM 4944", "accession": "GCA_900105405.1", "taxid": 2702, 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"coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Gardnerella", "vaginalis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }