{ "type": "genome", "identifier": "GCF_900105765.1", "organism": "Ruania alba", "title": "Ruania alba", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900105765.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488554", "wgs_master": "FNTX00000000.1", "refseq_category": "reference genome", "taxid": "648782", "species_taxid": "648782", "organism_name": "Ruania alba", "infraspecific_name": "strain=DSM 21368", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/22", "asm_name": "IMG-taxon 2634166281 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900105765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/105/765/GCF_900105765.1_IMG-taxon_2634166281_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4830506", "genome_size_ungapped": "4830506", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900105765.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "4381", "protein_coding_gene_count": "4275", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-22", "dateModified": "2016-10-22", "datePublished": "2016-10-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Ruania alba" ], "sample_taxid": [ "648782" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.310 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4830506", "Number of Sequences": "2", "Longest Sequences (bp)": "2546226", "N50 (bp)": "2546226", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.6", "Number of CDSs": "4405", "Average Protein Length": "337.2", "Coding Ratio (%)": "92.2", "Number of rRNAs": "6", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ruania alba", "strain": "strain=DSM 21368", "accession": "GCA_900105765.1", "taxid": 648782, "species_taxid": 648782, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1606, "total_fragments": 1609, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Ruania halotolerans", "strain": "strain=M4N3S171", "accession": "GCA_021049285.1", "taxid": 2897773, "species_taxid": 2897773, "relation_to_type": "type", "validated": true, "ani": 82.8408, "matched_fragments": 992, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruania alkalisoli", "strain": "strain=RN3S43", "accession": "GCA_014960965.1", "taxid": 2779775, "species_taxid": 2779775, "relation_to_type": "type", "validated": true, "ani": 82.7914, "matched_fragments": 944, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruania rhizosphaerae", "strain": "strain=LNNU 22110", "accession": "GCA_009805705.1", "taxid": 1840413, "species_taxid": 1840413, "relation_to_type": "type", "validated": true, "ani": 82.646, "matched_fragments": 889, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruania suaedae", "strain": "strain=LR1S40", "accession": "GCA_021049265.1", "taxid": 2897774, "species_taxid": 2897774, "relation_to_type": "type", "validated": true, "ani": 81.6789, "matched_fragments": 801, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruania albidiflava", "strain": "strain=DSM 18029", "accession": "GCA_000421225.1", "taxid": 366586, "species_taxid": 366586, "relation_to_type": "type", "validated": true, "ani": 79.916, "matched_fragments": 636, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruania zhangjianzhongii", "strain": "strain=HY168", "accession": "GCA_008000995.1", "taxid": 2603206, "species_taxid": 2603206, "relation_to_type": "type", "validated": true, "ani": 79.7121, "matched_fragments": 649, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella kanbiaonis", "strain": "strain=HY164", "accession": "GCA_009708215.1", "taxid": 2675754, "species_taxid": 2675754, "relation_to_type": "type", "validated": true, "ani": 79.1477, "matched_fragments": 627, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella gossypii", "strain": "strain=N2-46", "accession": "GCA_019947135.1", "taxid": 2800820, "species_taxid": 2800820, "relation_to_type": "type", "validated": true, "ani": 78.9642, "matched_fragments": 595, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella glacieicola", "strain": "strain=T3246-1", "accession": "GCA_004353825.1", "taxid": 2518684, "species_taxid": 2518684, "relation_to_type": "type", "validated": true, "ani": 78.8964, "matched_fragments": 602, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella aeris", "strain": "strain=CIP 111667", "accession": "GCA_902703175.1", "taxid": 2761496, "species_taxid": 2761496, "relation_to_type": "type", "validated": true, "ani": 78.8482, "matched_fragments": 591, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900105765.1", "gtdb_species": "s__Haloactinobacterium album", "ani": 100.0, "matched_fragments": 1606, "total_fragments": 1609, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Haloactinobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014960965.1", "gtdb_species": "s__Haloactinobacterium sp014960965", "ani": 82.7828, "matched_fragments": 945, "total_fragments": 1609, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Haloactinobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009805705.1", "gtdb_species": "s__Haloactinobacterium sp009805705", "ani": 82.6538, "matched_fragments": 888, "total_fragments": 1609, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Haloactinobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000421225.1", "gtdb_species": "s__Ruania albidiflava", "ani": 79.8875, "matched_fragments": 640, "total_fragments": 1609, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Ruania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008000995.1", "gtdb_species": "s__Ruania sp008000995", "ani": 79.7117, "matched_fragments": 649, "total_fragments": 1609, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Ruania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019116305.1", "gtdb_species": "s__Ruania gallistercoris", "ani": 79.5751, "matched_fragments": 579, "total_fragments": 1609, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Ruania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009708215.1", "gtdb_species": "s__Occultella sp009708215", "ani": 79.1626, "matched_fragments": 625, "total_fragments": 1609, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Occultella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.28", "min_intra_species_ani": "97.28", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004353825.1", "gtdb_species": "s__Occultella glacieicola", "ani": 78.8895, "matched_fragments": 603, "total_fragments": 1609, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Occultella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902703175.1", "gtdb_species": "s__Occultella aeris", "ani": 78.8023, "matched_fragments": 594, "total_fragments": 1609, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Occultella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009733795.1", "gtdb_species": "s__Pseudactinotalea caeni", "ani": 78.0606, "matched_fragments": 466, "total_fragments": 1609, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Pseudactinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004786095.1", "gtdb_species": "s__Serinibacter_A arcticus", "ani": 77.2346, "matched_fragments": 287, "total_fragments": 1609, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Serinibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": -0.302, "doubling_h": null, "growth_tmp": 29.0, "optimum_tmp": 28.25, "optimum_ph": 8.5, "genome_size": 4174923.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Ruania", "alba" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }