{ "type": "genome", "identifier": "GCF_900105835.1", "organism": "Pseudomonas fragi", "title": "Pseudomonas fragi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900105835.1", "bioproject": "PRJNA224116", "biosample": "SAMN05216594", "wgs_master": "na", "refseq_category": "na", "taxid": "296", "species_taxid": "296", "organism_name": "Pseudomonas fragi", "infraspecific_name": "strain=NRRL B-727", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2667527431 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900105835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/105/835/GCF_900105835.1_IMG-taxon_2667527431_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5072304", "genome_size_ungapped": "5072204", "gc_percent": "59.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-12", "total_gene_count": "4640", "protein_coding_gene_count": "4478", "non_coding_gene_count": "101", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas fragi" ], "sample_taxid": [ "296" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.418 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5072204", "Number of Sequences": "1", "Longest Sequences (bp)": "5072204", "N50 (bp)": "5072204", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.3", "Number of CDSs": "4610", "Average Protein Length": "322.5", "Coding Ratio (%)": "87.9", "Number of rRNAs": "25", "Number of tRNAs": "73", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas fragi", "strain": "strain=NRRL B-727", "accession": "GCA_900105835.1", "taxid": 296, "species_taxid": 296, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas psychrophila", "strain": "strain=CCUG 53877", "accession": "GCA_008801485.1", "taxid": 122355, "species_taxid": 122355, "relation_to_type": "type", "validated": true, "ani": 87.6271, "matched_fragments": 1331, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas psychrophila", "strain": "strain=DSM 17535", "accession": "GCA_001043005.1", "taxid": 122355, "species_taxid": 122355, "relation_to_type": "type", "validated": true, "ani": 87.5985, "matched_fragments": 1329, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas paraversuta", "strain": "strain=V4/DAB/S4/2a", "accession": "GCA_904063065.1", "taxid": 2750624, "species_taxid": 2750624, "relation_to_type": "type", "validated": true, "ani": 85.789, "matched_fragments": 1241, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas helleri", "strain": "strain=DSM 29165", "accession": "GCA_001043025.1", "taxid": 1608996, "species_taxid": 1608996, "relation_to_type": "type", "validated": true, "ani": 85.0606, "matched_fragments": 1166, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas taetrolens", "strain": "strain=NCTC10697", "accession": "GCA_900475285.1", "taxid": 47884, "species_taxid": 47884, "relation_to_type": "type", "validated": true, "ani": 85.0325, "matched_fragments": 1151, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas taetrolens", "strain": "strain=DSM 21104", "accession": "GCA_001042915.1", "taxid": 47884, "species_taxid": 47884, "relation_to_type": "type", "validated": true, "ani": 84.9178, "matched_fragments": 1162, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas marginalis", "strain": "strain=DSM 13124", "accession": "GCA_007858155.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", "validated": true, "ani": 82.3559, "matched_fragments": 1003, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 82.3329, "matched_fragments": 1005, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas spelaei", "strain": "strain=CCM 7893", "accession": "GCA_009724245.1", "taxid": 1055469, "species_taxid": 1055469, "relation_to_type": "type", "validated": true, "ani": 82.3231, "matched_fragments": 972, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", 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