{ "type": "genome", "identifier": "GCF_900106015.1", "organism": "Pseudomonas sihuiensis", "title": "Pseudomonas sihuiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900106015.1", "bioproject": "PRJNA224116", "biosample": "SAMN05216363", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1274359", "species_taxid": "1274359", "organism_name": "Pseudomonas sihuiensis", "infraspecific_name": "strain=KCTC 32246", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2667527235 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900106015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/106/015/GCF_900106015.1_IMG-taxon_2667527235_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5476367", "genome_size_ungapped": "5476267", "gc_percent": "62.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900106015.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "5179", "protein_coding_gene_count": "4999", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas sihuiensis" ], "sample_taxid": [ "1274359" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.518 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5476267", "Number of Sequences": "1", "Longest Sequences (bp)": "5476267", "N50 (bp)": "5476267", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.5", "Number of CDSs": "5087", "Average Protein Length": "319.0", "Coding Ratio (%)": "88.9", "Number of rRNAs": "12", "Number of tRNAs": "70", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas sihuiensis", "strain": "strain=KCTC 32246", "accession": "GCA_900106015.1", 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"type", "validated": true, "ani": 96.6623, "matched_fragments": 1515, "total_fragments": 1825, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudomonas toyotomiensis", "strain": "strain=JCM 15604", "accession": "GCA_900115695.1", "taxid": 554344, "species_taxid": 554344, "relation_to_type": "type", "validated": true, "ani": 94.5266, "matched_fragments": 1517, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas toyotomiensis", "strain": "strain=DSM 26169", "accession": "GCA_002741095.1", "taxid": 554344, "species_taxid": 554344, "relation_to_type": "type", "validated": true, "ani": 94.519, "matched_fragments": 1510, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oleovorans subsp. oleovorans", "strain": "strain=NBRC 13583", "accession": "GCA_002091815.1", "taxid": 1218129, "species_taxid": 301, "relation_to_type": "type", "validated": true, "ani": 93.6768, "matched_fragments": 1220, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaliphila", "strain": "strain=NBRC 102411", "accession": "GCA_002091495.1", "taxid": 101564, "species_taxid": 101564, "relation_to_type": "type", "validated": true, "ani": 92.0301, "matched_fragments": 1427, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaliphila", "strain": "strain=JCM 10630", "accession": "GCA_900101755.1", "taxid": 101564, "species_taxid": 101564, "relation_to_type": "type", "validated": true, "ani": 91.9762, "matched_fragments": 1445, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sediminis", "strain": "strain=PI11", "accession": "GCA_002741105.1", "taxid": 1691904, "species_taxid": 1691904, "relation_to_type": "type", "validated": true, "ani": 91.5729, "matched_fragments": 1411, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guguanensis", "strain": "strain=JCM 18416", "accession": "GCA_900104265.1", "taxid": 1198456, "species_taxid": 1198456, "relation_to_type": "type", "validated": true, "ani": 89.7446, "matched_fragments": 1371, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 89.2808, "matched_fragments": 1361, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas yangonensis", "strain": "strain=MY50", "accession": "GCA_009932725.1", "taxid": 2579922, "species_taxid": 2579922, "relation_to_type": "type", "validated": true, "ani": 89.2466, "matched_fragments": 1313, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 83.4656, "matched_fragments": 982, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 82.1743, "matched_fragments": 919, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900106015.1", "gtdb_species": "s__Pseudomonas_E sihuiensis", "ani": 100.0, "matched_fragments": 1822, "total_fragments": 1825, "gtdb_taxonomy": 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