{ "type": "genome", "identifier": "GCF_900106525.1", "organism": "Lysobacter enzymogenes", "title": "Lysobacter enzymogenes", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900106525.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421681", "wgs_master": "FNOG00000000.1", "refseq_category": "na", "taxid": "69", "species_taxid": "69", "organism_name": "Lysobacter enzymogenes", "infraspecific_name": "strain=ATCC 29487", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/22", "asm_name": "IMG-taxon 2675903697 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900106525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/106/525/GCF_900106525.1_IMG-taxon_2675903697_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6263953", "genome_size_ungapped": "6246177", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900106525.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "5153", "protein_coding_gene_count": "5036", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-22", "dateModified": "2016-10-22", "datePublished": "2016-10-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Lysobacter enzymogenes" ], "sample_taxid": [ "69" ], "sample_host_organism": 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69, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 2078, "total_fragments": 2078, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysobacter capsici", "strain": "strain=VKM B-2533", "accession": "GCA_014779555.2", "taxid": 435897, "species_taxid": 435897, "relation_to_type": "type", "validated": true, "ani": 86.132, "matched_fragments": 1492, "total_fragments": 2078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter antibioticus", "strain": "strain=ATCC 29479", "accession": "GCA_001442535.1", "taxid": 84531, "species_taxid": 84531, "relation_to_type": "type", "validated": true, "ani": 85.2403, "matched_fragments": 1358, "total_fragments": 2078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter silvisoli", "strain": "strain=zong2l5", "accession": "GCA_003382365.1", "taxid": 2293254, "species_taxid": 2293254, "relation_to_type": "type", "validated": true, "ani": 84.5467, "matched_fragments": 1097, "total_fragments": 2078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=DSM 25623", "accession": "GCA_003814555.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 83.4246, "matched_fragments": 873, "total_fragments": 2078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arseniciresistens", "strain": "strain=ZS79", "accession": "GCA_000768335.1", "taxid": 1385522, "species_taxid": 1385522, "relation_to_type": "type", "validated": true, "ani": 82.654, "matched_fragments": 674, "total_fragments": 2078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter prati", "strain": "strain=SYSU H10001", "accession": "GCA_009765215.1", "taxid": 2596704, "species_taxid": 2596704, "relation_to_type": "type", "validated": true, "ani": 82.3725, "matched_fragments": 813, "total_fragments": 2078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter soli", "strain": "strain=KCTC 22011", "accession": "GCA_003382285.1", "taxid": 453783, "species_taxid": 453783, "relation_to_type": "type", "validated": true, "ani": 81.8698, "matched_fragments": 832, "total_fragments": 2078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aquatica", "strain": "strain=RIB1-20", "accession": "GCA_022662575.1", "taxid": 450364, "species_taxid": 450364, "relation_to_type": "type", "validated": true, "ani": 81.731, "matched_fragments": 892, "total_fragments": 2078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter luteus", "strain": "strain=CECT 30171", "accession": "GCA_907164845.1", "taxid": 2822368, "species_taxid": 2822368, "relation_to_type": "type", "validated": true, "ani": 81.4386, "matched_fragments": 639, "total_fragments": 2078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter chinensis", "strain": "strain=TLK-CK17", "accession": "GCA_021725675.1", "taxid": 2912247, "species_taxid": 2912247, "relation_to_type": "type", "validated": true, "ani": 81.311, "matched_fragments": 828, "total_fragments": 2078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter solisilvae", "strain": "strain=R19", "accession": "GCA_016613535.2", "taxid": 2763317, "species_taxid": 2763317, "relation_to_type": "type", "validated": true, "ani": 81.2457, "matched_fragments": 770, "total_fragments": 2078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter penaei", "strain": "strain=SG-8", "accession": "GCA_014145395.1", "taxid": 2759900, "species_taxid": 2759900, "relation_to_type": "type", "validated": true, "ani": 80.7063, "matched_fragments": 624, "total_fragments": 2078, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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"status": "-" }, { "accession": "GCF_001442515.1", "gtdb_species": "s__Lysobacter enzymogenes_B", "ani": 90.5254, "matched_fragments": 1649, "total_fragments": 2078, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.93", "min_intra_species_ani": "95.70", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001428685.1", "gtdb_species": "s__Lysobacter sp001428685", "ani": 84.6472, "matched_fragments": 1047, "total_fragments": 2078, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.42", "min_intra_species_ani": "98.61", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.352, "cell_length": 0.341, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 28.882, "optimum_ph": 7.253, "genome_size": 6141880.2, "gc_content": 69.38, "coding_genes": 5044.667, "rRNA16S_genes": 2.0, "tRNA_genes": 55.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.117, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.882, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 1.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Lysobacter", "enzymogenes" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }