{
    "type": "genome",
    "identifier": "GCF_900106625.1",
    "organism": "Nitrosomonas europaea",
    "title": "Nitrosomonas europaea",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900106625.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05216310",
        "wgs_master": "FNNX00000000.1",
        "refseq_category": "na",
        "taxid": "915",
        "species_taxid": "915",
        "organism_name": "Nitrosomonas europaea",
        "infraspecific_name": "strain=Nm50",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/22",
        "asm_name": "IMG-taxon 2671180134 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900106625.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/106/625/GCF_900106625.1_IMG-taxon_2671180134_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2760276",
        "genome_size_ungapped": "2760276",
        "gc_percent": "50.500000",
        "replicon_count": "0",
        "scaffold_count": "91",
        "contig_count": "91",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900106625.1-RS_2024_08_10",
        "annotation_date": "2024-08-10",
        "total_gene_count": "2675",
        "protein_coding_gene_count": "2557",
        "non_coding_gene_count": "49",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-22",
    "dateModified": "2016-10-22",
    "datePublished": "2016-10-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrosomonas europaea"
        ],
        "sample_taxid": [
            "915"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.790 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 12.5,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2760276",
        "Number of Sequences": "91",
        "Longest Sequences (bp)": "196220",
        "N50 (bp)": "47345",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.7",
        "Number of CDSs": "2534",
        "Average Protein Length": "315.9",
        "Coding Ratio (%)": "87.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Nitrosomonas europaea",
                "strain": "strain=ATCC 25978",
                "accession": "GCA_900167395.1",
                "taxid": 915,
                "species_taxid": 915,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9793,
                "matched_fragments": 860,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Nitrosomonas eutropha",
                "strain": "strain=Nm 57",
                "accession": "GCA_003201195.1",
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                "species_taxid": 916,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2774,
                "matched_fragments": 438,
                "total_fragments": 878,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosomonas communis",
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                "accession": "GCA_008124795.1",
                "taxid": 44574,
                "species_taxid": 44574,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6558,
                "matched_fragments": 53,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosomonas communis",
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                "accession": "GCA_001007935.1",
                "taxid": 44574,
                "species_taxid": 44574,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5952,
                "matched_fragments": 54,
                "total_fragments": 878,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosomonas stercoris",
                "strain": "strain=KYUHI-S",
                "accession": "GCA_006742785.1",
                "taxid": 1444684,
                "species_taxid": 1444684,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.277,
                "matched_fragments": 157,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosomonas halophila",
                "strain": "strain=Nm1",
                "accession": "GCA_900107165.1",
                "taxid": 44576,
                "species_taxid": 44576,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9553,
                "matched_fragments": 150,
                "total_fragments": 878,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 12.5,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900167395.1",
                "gtdb_species": "s__Nitrosomonas europaea",
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                "total_fragments": 878,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.24",
                "min_intra_species_ani": "97.89",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009833125.1",
                "gtdb_species": "s__Nitrosomonas sp009833125",
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                "total_fragments": 878,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015075225.1",
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                "matched_fragments": 491,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900116685.1",
                "gtdb_species": "s__Nitrosomonas eutropha_A",
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                "matched_fragments": 436,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003201195.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.12",
                "min_intra_species_ani": "98.82",
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                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
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                "gtdb_species": "s__Nitrosomonas eutropha_B",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": 0.0,
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        "growth_tmp": 26.5,
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        "coding_genes": 2526.0,
        "rRNA16S_genes": 1.0,
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        "gram_stain": 0.0,
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        "range_salinity": null,
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        "mesophilic_range_tmp": 1.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 1.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
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        "europaea"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}