{ "type": "genome", "identifier": "GCF_900106645.1", "organism": "Flavobacterium degerlachei", "title": "Flavobacterium degerlachei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900106645.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444338", "wgs_master": "FNMV00000000.1", "refseq_category": "reference genome", "taxid": "229203", "species_taxid": "229203", "organism_name": "Flavobacterium degerlachei", "infraspecific_name": "strain=DSM 15718", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/22", "asm_name": "IMG-taxon 2693429883 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900106645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/106/645/GCF_900106645.1_IMG-taxon_2693429883_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3856409", "genome_size_ungapped": "3855819", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "43", "contig_count": "43", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900106645.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3363", "protein_coding_gene_count": "3293", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-22", "dateModified": "2016-10-22", "datePublished": "2016-10-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium degerlachei" ], "sample_taxid": [ "229203" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.079 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3856409", "Number of Sequences": "43", "Longest Sequences (bp)": "505842", "N50 (bp)": "214274", "Gap Ratio (%)": "0.015299", "GCcontent (%)": "34.0", "Number of CDSs": "3266", "Average Protein Length": "341.1", "Coding Ratio (%)": "86.7", "Number of rRNAs": "2", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium degerlachei", "strain": "strain=DSM 15718", "accession": "GCA_900106645.1", 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"matched_fragments": 478, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium petrolei", "strain": "strain=Kopri-42", "accession": "GCA_003314435.2", "taxid": 2259594, "species_taxid": 2259594, "relation_to_type": "type", "validated": true, "ani": 79.6742, "matched_fragments": 546, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium rhamnosiphilum", "strain": "strain=LB3P52", "accession": "GCA_004349195.1", "taxid": 2541724, "species_taxid": 2541724, "relation_to_type": "type", "validated": true, "ani": 79.6741, "matched_fragments": 532, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glaciei", "strain": "strain=CGMCC 1.5380", "accession": "GCA_007994155.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 79.5526, "matched_fragments": 525, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glaciei", "strain": "strain=DSM 19728", "accession": "GCA_003350545.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 79.5502, "matched_fragments": 528, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xanthum", "strain": "strain=DSM 3661", "accession": "GCA_900142695.1", "taxid": 69322, "species_taxid": 69322, "relation_to_type": "type", "validated": true, "ani": 79.3771, "matched_fragments": 473, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sandaracinum", "strain": "strain=LB-D12", "accession": "GCA_004349135.1", "taxid": 2541733, "species_taxid": 2541733, "relation_to_type": "type", "validated": true, "ani": 79.3758, "matched_fragments": 518, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium omnivorum", "strain": "strain=CGMCC 1.2747", "accession": "GCA_900099915.1", "taxid": 178355, "species_taxid": 178355, "relation_to_type": "type", "validated": true, "ani": 79.3379, "matched_fragments": 509, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium weaverense", "strain": "strain=DSM 19727", "accession": "GCA_003688495.1", "taxid": 271156, "species_taxid": 271156, "relation_to_type": "type", "validated": true, "ani": 79.3156, "matched_fragments": 428, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flevense", "strain": "strain=NBRC 14960", "accession": "GCA_006539745.1", "taxid": 983, "species_taxid": 983, "relation_to_type": "type", "validated": true, "ani": 78.8083, "matched_fragments": 379, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", 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"coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "degerlachei" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }