{ "type": "genome", "identifier": "GCF_900106665.1", "organism": "Paracoccus sanguinis", "title": "Paracoccus sanguinis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900106665.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444276", "wgs_master": "FNNA00000000.1", "refseq_category": "na", "taxid": "1545044", "species_taxid": "1545044", "organism_name": "Paracoccus sanguinis", "infraspecific_name": "strain=DSM 29303", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/22", "asm_name": "IMG-taxon 2693429863 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900106665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/106/665/GCF_900106665.1_IMG-taxon_2693429863_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3588279", "genome_size_ungapped": "3588279", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900106665.1-RS_2024_04_24", "annotation_date": "2024-04-24", "total_gene_count": "3486", "protein_coding_gene_count": "3372", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-22", "dateModified": "2016-10-22", "datePublished": "2016-10-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccus sanguinis" ], "sample_taxid": [ "1545044" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.960 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3588279", "Number of Sequences": "21", "Longest Sequences (bp)": "1354226", "N50 (bp)": "1005836", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.7", "Number of CDSs": "3435", "Average Protein Length": "313.4", "Coding Ratio (%)": "90.0", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paracoccus sanguinis", "strain": "strain=DSM 29303", "accession": "GCA_900106665.1", "taxid": 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"validated": true, "ani": 82.5721, "matched_fragments": 720, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus endophyticus", "strain": "strain=SYSUP0003", "accession": "GCA_003286075.1", "taxid": 2233774, "species_taxid": 2233774, "relation_to_type": "type", "validated": true, "ani": 82.5721, "matched_fragments": 726, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aeridis", "strain": "strain=JC501", "accession": "GCA_004923205.2", "taxid": 1966466, "species_taxid": 1966466, "relation_to_type": "type", "validated": true, "ani": 82.3765, "matched_fragments": 656, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus binzhouensis", "strain": "strain=wg1", "accession": "GCA_016446475.1", "taxid": 2796149, "species_taxid": 2796149, "relation_to_type": "type", "validated": true, "ani": 81.3776, "matched_fragments": 644, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus mutanolyticus", "strain": "strain=RSP-02", "accession": "GCA_003285265.1", "taxid": 1499308, "species_taxid": 1499308, "relation_to_type": "type", "validated": true, "ani": 80.1666, "matched_fragments": 579, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus shandongensis", "strain": "strain=wg2", "accession": "GCA_017315735.1", "taxid": 2816048, "species_taxid": 2816048, "relation_to_type": "type", "validated": true, "ani": 79.8381, "matched_fragments": 560, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus everestensis", "strain": "strain=S8-55", "accession": "GCA_021491915.1", "taxid": 2903900, "species_taxid": 2903900, "relation_to_type": "type", "validated": true, "ani": 78.7418, "matched_fragments": 447, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus nototheniae", "strain": "strain=I-41R45", "accession": "GCA_004335005.1", "taxid": 2489002, "species_taxid": 2489002, "relation_to_type": "type", "validated": true, "ani": 78.6668, "matched_fragments": 468, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus tegillarcae", "strain": "strain=BM15", "accession": "GCA_002847305.1", "taxid": 1529068, "species_taxid": 1529068, "relation_to_type": "type", "validated": true, "ani": 77.9104, "matched_fragments": 399, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900106665.1", "gtdb_species": "s__Paracoccus sanguinis", "ani": 100.0, "matched_fragments": 1184, "total_fragments": 1185, "gtdb_taxonomy": 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