{
    "type": "genome",
    "identifier": "GCF_900106765.1",
    "organism": "Tepidimicrobium xylanilyticum",
    "title": "Tepidimicrobium xylanilyticum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900106765.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05660923",
        "wgs_master": "FNNG00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1123352",
        "species_taxid": "1123352",
        "organism_name": "Tepidimicrobium xylanilyticum",
        "infraspecific_name": "strain=DSM 23310",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/22",
        "asm_name": "IMG-taxon 2599185171 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900106765.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/106/765/GCF_900106765.1_IMG-taxon_2599185171_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3002518",
        "genome_size_ungapped": "3000632",
        "gc_percent": "33.500000",
        "replicon_count": "0",
        "scaffold_count": "38",
        "contig_count": "38",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900106765.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "3110",
        "protein_coding_gene_count": "3014",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-22",
    "dateModified": "2016-10-22",
    "datePublished": "2016-10-22",
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        "sample_count": 1,
        "sample_organism": [
            "Tepidimicrobium xylanilyticum DSM 23310"
        ],
        "sample_taxid": [
            "437529"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Beijing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.831 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
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    "_dfast": {
        "Total Sequence Length (bp)": "3002518",
        "Number of Sequences": "38",
        "Longest Sequences (bp)": "479365",
        "N50 (bp)": "187430",
        "Gap Ratio (%)": "0.062814",
        "GCcontent (%)": "33.3",
        "Number of CDSs": "3056",
        "Average Protein Length": "287.2",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Keratinibaculum paraultunense",
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            {
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            {
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                "mean_intra_species_ani": "N/A",
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            {
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            {
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tissierellaceae;g__CABMKH01",
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    "_bac2feature": {
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        "genome_size": null,
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        "coding_genes": null,
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        "facultative_respiration": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "xylanilyticum"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}