{ "type": "genome", "identifier": "GCF_900107145.1", "organism": "Allochromatium warmingii", "title": "Allochromatium warmingii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900107145.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421644", "wgs_master": "FNOW00000000.1", "refseq_category": "reference genome", "taxid": "61595", "species_taxid": "61595", "organism_name": "Allochromatium warmingii", "infraspecific_name": "strain=DSM 173", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/22", "asm_name": "IMG-taxon 2675903030 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900107145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/107/145/GCF_900107145.1_IMG-taxon_2675903030_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2958507", "genome_size_ungapped": "2958356", "gc_percent": "55.500000", "replicon_count": "0", "scaffold_count": "94", "contig_count": "94", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900107145.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "2756", "protein_coding_gene_count": "2651", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-22", "dateModified": "2016-10-22", "datePublished": "2016-10-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Allochromatium warmingii" ], "sample_taxid": [ "61595" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.837 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2958507", "Number of Sequences": "94", "Longest Sequences (bp)": "155883", "N50 (bp)": "60974", "Gap Ratio (%)": "0.005104", "GCcontent (%)": "55.3", "Number of CDSs": "2641", "Average Protein Length": "332.1", "Coding Ratio (%)": "88.9", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Allochromatium warmingii", "strain": "strain=DSM 173", "accession": "GCA_900107145.1", "taxid": 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