{ "type": "genome", "identifier": "GCF_900107255.1", "organism": "Micromonospora pattaloongensis", "title": "Micromonospora pattaloongensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900107255.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444365", "wgs_master": "FNPH00000000.1", "refseq_category": "reference genome", "taxid": "405436", "species_taxid": "405436", "organism_name": "Micromonospora pattaloongensis", "infraspecific_name": "strain=DSM 45245", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/22", "asm_name": "IMG-taxon 2693429860 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900107255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/107/255/GCF_900107255.1_IMG-taxon_2693429860_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5353873", "genome_size_ungapped": "5353873", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "28", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900107255.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "4947", "protein_coding_gene_count": "4802", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-22", "dateModified": "2016-10-22", "datePublished": "2016-10-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora pattaloongensis" ], "sample_taxid": [ "405436" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.425 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5353873", "Number of Sequences": "28", "Longest Sequences (bp)": "1233161", "N50 (bp)": "560538", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.4", "Number of CDSs": "4939", "Average Protein Length": "323.8", "Coding Ratio (%)": "89.6", "Number of rRNAs": "2", "Number of tRNAs": "54", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora pattaloongensis", "strain": "strain=DSM 45245", "accession": "GCA_900107255.1", 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"matched_fragments": 1010, "total_fragments": 1771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora eburnea", "strain": "strain=DSM 44814", "accession": "GCA_900090225.1", "taxid": 227316, "species_taxid": 227316, "relation_to_type": "type", "validated": true, "ani": 81.5713, "matched_fragments": 1033, "total_fragments": 1771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 81.5534, "matched_fragments": 966, "total_fragments": 1771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chaiyaphumensis", "strain": "strain=DSM 45246", "accession": "GCA_900091435.1", "taxid": 307119, "species_taxid": 307119, "relation_to_type": "type", "validated": true, "ani": 81.5465, "matched_fragments": 1072, 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