{ "type": "genome", "identifier": "GCF_900107635.1", "organism": "Flavobacterium gillisiae", "title": "Flavobacterium gillisiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900107635.1", "bioproject": "PRJNA224116", "biosample": "SAMN05443667", "wgs_master": "FNRD00000000.1", "refseq_category": "reference genome", "taxid": "150146", "species_taxid": "150146", "organism_name": "Flavobacterium gillisiae", "infraspecific_name": "strain=DSM 22376", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/22", "asm_name": "IMG-taxon 2693429912 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900107635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/107/635/GCF_900107635.1_IMG-taxon_2693429912_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4377959", "genome_size_ungapped": "4377959", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900107635.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3805", "protein_coding_gene_count": "3722", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-22", "dateModified": "2016-10-22", "datePublished": "2016-10-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium gillisiae" ], "sample_taxid": [ "150146" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.226 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4377959", "Number of Sequences": "33", "Longest Sequences (bp)": "791727", "N50 (bp)": "267495", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.3", "Number of CDSs": "3728", "Average Protein Length": "334.6", "Coding Ratio (%)": "85.5", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium gillisiae", "strain": "strain=DSM 22376", "accession": "GCA_900107635.1", 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487, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 79.5653, "matched_fragments": 562, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrolimnae", "strain": "strain=LMG 22018", "accession": "GCA_003312425.1", "taxid": 249351, "species_taxid": 249351, "relation_to_type": "type", "validated": true, "ani": 79.4722, "matched_fragments": 528, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 78.3267, "matched_fragments": 440, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 78.2176, "matched_fragments": 364, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 78.1066, "matched_fragments": 355, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium jumunjinense", "strain": "strain=HME7102", "accession": "GCA_021650975.2", "taxid": 998845, "species_taxid": 998845, "relation_to_type": "type", "validated": true, "ani": 77.2244, "matched_fragments": 188, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { 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89.2609, "matched_fragments": 1004, "total_fragments": 1442, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002836475.1", "gtdb_species": "s__Flavobacterium sp002836475", "ani": 85.4962, "matched_fragments": 881, "total_fragments": 1442, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000264055.1", "gtdb_species": "s__Flavobacterium sp000264055", "ani": 85.0428, "matched_fragments": 885, 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