{
    "type": "genome",
    "identifier": "GCF_900108005.1",
    "organism": "Halopseudomonas aestusnigri",
    "title": "Halopseudomonas aestusnigri",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900108005.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05216586",
        "wgs_master": "FNVE00000000.1",
        "refseq_category": "na",
        "taxid": "857252",
        "species_taxid": "857252",
        "organism_name": "Halopseudomonas aestusnigri",
        "infraspecific_name": "strain=CECT 8317",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/24",
        "asm_name": "IMG-taxon 2663762778 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900108005.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/108/005/GCF_900108005.1_IMG-taxon_2663762778_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3836967",
        "genome_size_ungapped": "3834943",
        "gc_percent": "61.000000",
        "replicon_count": "0",
        "scaffold_count": "27",
        "contig_count": "27",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900108005.1-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "3603",
        "protein_coding_gene_count": "3516",
        "non_coding_gene_count": "57",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-24",
    "dateModified": "2016-10-24",
    "datePublished": "2016-10-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halopseudomonas aestusnigri"
        ],
        "sample_taxid": [
            "857252"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.076 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3836967",
        "Number of Sequences": "27",
        "Longest Sequences (bp)": "867541",
        "N50 (bp)": "344215",
        "Gap Ratio (%)": "0.052750",
        "GCcontent (%)": "60.9",
        "Number of CDSs": "3517",
        "Average Protein Length": "328.3",
        "Coding Ratio (%)": "90.3",
        "Number of rRNAs": "4",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Halopseudomonas aestusnigri",
                "strain": "strain=CECT 8317",
                "accession": "GCA_900108005.1",
                "taxid": 857252,
                "species_taxid": 857252,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1263,
                "total_fragments": 1264,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halopseudomonas aestusnigri",
                "strain": "strain=VGXO14",
                "accession": "GCA_002197985.1",
                "taxid": 857252,
                "species_taxid": 857252,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9836,
                "matched_fragments": 1244,
                "total_fragments": 1264,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halopseudomonas oceani",
                "strain": "strain=CGMCC 1.15195",
                "accession": "GCA_014641295.1",
                "taxid": 1708783,
                "species_taxid": 1708783,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.7224,
                "matched_fragments": 1028,
                "total_fragments": 1264,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halopseudomonas oceani",
                "strain": "strain=DSM 100277",
                "accession": "GCA_002903165.1",
                "taxid": 1708783,
                "species_taxid": 1708783,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.6122,
                "matched_fragments": 1019,
                "total_fragments": 1264,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halopseudomonas pachastrellae",
                "strain": "strain=JCM 12285",
                "accession": "GCA_900114765.1",
                "taxid": 254161,
                "species_taxid": 254161,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0881,
                "matched_fragments": 865,
                "total_fragments": 1264,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halopseudomonas pachastrellae",
                "strain": "strain=CCUG 46540",
                "accession": "GCA_001989375.1",
                "taxid": 254161,
                "species_taxid": 254161,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.9952,
                "matched_fragments": 857,
                "total_fragments": 1264,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas insulae",
                "strain": "strain=UL073",
                "accession": "GCA_016901015.1",
                "taxid": 2809017,
                "species_taxid": 2809017,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6036,
                "matched_fragments": 376,
                "total_fragments": 1264,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas chloritidismutans",
                "strain": "strain=AW-1",
                "accession": "GCA_000495915.1",
                "taxid": 203192,
                "species_taxid": 203192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.464,
                "matched_fragments": 352,
                "total_fragments": 1264,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas degradans",
                "strain": "strain=DSM 50238",
                "accession": "GCA_002891015.1",
                "taxid": 2968968,
                "species_taxid": 2968968,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4304,
                "matched_fragments": 361,
                "total_fragments": 1264,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas degradans",
                "strain": "strain=FDAARGOS_876",
                "accession": "GCA_016028635.1",
                "taxid": 2968968,
                "species_taxid": 2968968,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.4115,
                "matched_fragments": 361,
                "total_fragments": 1264,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas degradans",
                "strain": "strain=DSM 50238",
                "accession": "GCA_024448505.1",
                "taxid": 2968968,
                "species_taxid": 2968968,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4016,
                "matched_fragments": 346,
                "total_fragments": 1264,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002197985.1",
                "gtdb_species": "s__Pseudomonas_D aestusnigri",
                "ani": 99.9836,
                "matched_fragments": 1244,
                "total_fragments": 1264,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.11",
                "min_intra_species_ani": "96.74",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 25,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002903165.1",
                "gtdb_species": "s__Pseudomonas_D oceani",
                "ani": 87.6122,
                "matched_fragments": 1019,
                "total_fragments": 1264,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003444685.1",
                "gtdb_species": "s__Pseudomonas_D gallaeciensis",
                "ani": 85.0769,
                "matched_fragments": 923,
                "total_fragments": 1264,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.87",
                "min_intra_species_ani": "97.82",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_900114765.1",
                "gtdb_species": "s__Pseudomonas_D pachastrellae",
                "ani": 84.0765,
                "matched_fragments": 866,
                "total_fragments": 1264,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.15",
                "min_intra_species_ani": "95.72",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCA_002296055.1",
                "gtdb_species": "s__Pseudomonas_D sp002296055",
                "ani": 82.6972,
                "matched_fragments": 695,
                "total_fragments": 1264,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900105255.1",
                "gtdb_species": "s__Pseudomonas_D sabulinigri",
                "ani": 80.868,
                "matched_fragments": 706,
                "total_fragments": 1264,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003797905.1",
                "gtdb_species": "s__Pseudomonas_D sp002683975",
                "ani": 79.2377,
                "matched_fragments": 585,
                "total_fragments": 1264,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.94",
                "min_intra_species_ani": "98.05",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Halopseudomonas",
        "aestusnigri"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}