{ "type": "genome", "identifier": "GCF_900108045.1", "organism": "Caloramator fervidus", "title": "Caloramator fervidus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900108045.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660865", "wgs_master": "FNUK00000000.1", "refseq_category": "reference genome", "taxid": "29344", "species_taxid": "29344", "organism_name": "Caloramator fervidus", "infraspecific_name": "strain=DSM 5463", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/24", "asm_name": "IMG-taxon 2599185232 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900108045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/108/045/GCF_900108045.1_IMG-taxon_2599185232_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1763241", "genome_size_ungapped": "1763241", "gc_percent": "30.500000", "replicon_count": "0", "scaffold_count": "46", "contig_count": "46", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900108045.1-RS_2024_04_12", "annotation_date": "2024-04-12", "total_gene_count": "1884", "protein_coding_gene_count": "1787", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-24", "dateModified": "2016-10-24", "datePublished": "2016-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Caloramator fervidus" ], "sample_taxid": [ "29344" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand:Rotorua Park" ], "sample_host_location_id": [], "data_size": "0.483 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1763241", "Number of Sequences": "46", "Longest Sequences (bp)": "225082", "N50 (bp)": "67218", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "30.7", "Number of CDSs": "1757", "Average Protein Length": "305.2", "Coding Ratio (%)": "91.2", "Number of rRNAs": "5", "Number of tRNAs": "57", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Caloramator fervidus", "strain": "strain=DSM 5463", "accession": "GCA_900108045.1", "taxid": 29344, 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"ani": 76.6083, "matched_fragments": 104, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fonticella tunisiensis", "strain": "strain=DSM 24455", "accession": "GCA_004364155.1", "taxid": 1096341, "species_taxid": 1096341, "relation_to_type": "type", "validated": true, "ani": 76.5549, "matched_fragments": 69, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium thermopalmarium", "strain": "strain=DSM 5974", "accession": "GCA_003097175.1", "taxid": 29373, "species_taxid": 29373, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0713, "matched_fragments": 50, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium isatidis", "strain": "strain=DSM 15098", "accession": "GCA_002285495.1", "taxid": 182773, "species_taxid": 182773, "relation_to_type": "type", "validated": true, "ani": 75.9506, "matched_fragments": 57, 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"below_threshold" }, { "organism_name": "Clostridium prolinivorans", "strain": "strain=PYR-10", "accession": "GCA_004011155.1", "taxid": 2769420, "species_taxid": 2769420, "relation_to_type": "type", "validated": true, "ani": 75.7835, "matched_fragments": 79, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium sporogenes", "strain": "strain=DSM 795", "accession": "GCA_001020205.1", "taxid": 1509, "species_taxid": 1509, "relation_to_type": "type", "validated": true, "ani": 75.6627, "matched_fragments": 71, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium sporogenes", "strain": "strain=NCTC13020", "accession": "GCA_900461305.1", "taxid": 1509, "species_taxid": 1509, "relation_to_type": "type", "validated": true, "ani": 75.6481, "matched_fragments": 71, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium 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12272", "accession": "GCA_900104115.1", "taxid": 94869, "species_taxid": 94869, "relation_to_type": "type", "validated": true, "ani": 75.3767, "matched_fragments": 53, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900108045.1", "gtdb_species": "s__Caloramator fervidus", "ani": 100.0, "matched_fragments": 559, "total_fragments": 564, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Caloramatoraceae;g__Caloramator", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000297115.1", "gtdb_species": "s__Caloramator australicus", "ani": 80.1506, "matched_fragments": 325, "total_fragments": 564, "gtdb_taxonomy": 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