{ "type": "genome", "identifier": "GCF_900108065.1", "organism": "Marinobacterium lutimaris", "title": "Marinobacterium lutimaris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900108065.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444390", "wgs_master": "FNVQ00000000.1", "refseq_category": "reference genome", "taxid": "568106", "species_taxid": "568106", "organism_name": "Marinobacterium lutimaris", "infraspecific_name": "strain=DSM 22012", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/24", "asm_name": "IMG-taxon 2693429862 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900108065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/108/065/GCF_900108065.1_IMG-taxon_2693429862_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5568333", "genome_size_ungapped": "5568156", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900108065.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "5143", "protein_coding_gene_count": "5033", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-24", "dateModified": "2016-10-24", "datePublished": "2016-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacterium lutimaris" ], "sample_taxid": [ "568106" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Taean coast" ], "sample_host_location_id": [], "data_size": "1.575 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5568333", "Number of Sequences": "21", "Longest Sequences (bp)": "2293788", "N50 (bp)": "869882", "Gap Ratio (%)": "0.003179", "GCcontent (%)": "57.4", "Number of CDSs": "5108", "Average Protein Length": "322.7", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "69", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacterium lutimaris", "strain": "strain=DSM 22012", "accession": "GCA_900108065.1", "taxid": 568106, "species_taxid": 568106, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1844, "total_fragments": 1845, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacterium mangrovicola", "strain": "strain=DSM 27697", "accession": "GCA_004339595.1", "taxid": 1476959, "species_taxid": 1476959, "relation_to_type": "type", "validated": true, "ani": 90.7354, "matched_fragments": 1430, "total_fragments": 1845, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium ramblicola", "strain": "strain=D7", "accession": "GCA_019084545.1", "taxid": 2849041, "species_taxid": 2849041, "relation_to_type": "type", "validated": true, "ani": 80.2218, "matched_fragments": 655, "total_fragments": 1845, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium litorale", "strain": "strain=DSM 23545", "accession": "GCA_000428985.1", "taxid": 404770, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas antri", "strain": "strain=Y3S6", "accession": "GCA_019430905.1", "taxid": 2846777, "species_taxid": 2846777, "relation_to_type": "type", "validated": true, "ani": 76.3075, "matched_fragments": 136, "total_fragments": 1845, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas flavescens", "strain": "strain=LMG 18387", "accession": "GCA_900100535.1", "taxid": 29435, "species_taxid": 29435, "relation_to_type": "type", "validated": true, "ani": 76.2986, "matched_fragments": 165, "total_fragments": 1845, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900108065.1", "gtdb_species": "s__Marinobacterium lutimaris", "ani": 100.0, "matched_fragments": 1844, "total_fragments": 1845, "gtdb_taxonomy": 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