{
    "type": "genome",
    "identifier": "GCF_900108135.1",
    "organism": "Nitrosospira multiformis ATCC 25196",
    "title": "Nitrosospira multiformis ATCC 25196",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900108135.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05216403",
        "wgs_master": "FNVK00000000.1",
        "refseq_category": "na",
        "taxid": "323848",
        "species_taxid": "1231",
        "organism_name": "Nitrosospira multiformis ATCC 25196",
        "infraspecific_name": "strain=Nl13",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/24",
        "asm_name": "IMG-taxon 2671180127 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900108135.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/108/135/GCF_900108135.1_IMG-taxon_2671180127_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3157522",
        "genome_size_ungapped": "3157522",
        "gc_percent": "54.000000",
        "replicon_count": "0",
        "scaffold_count": "72",
        "contig_count": "72",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900108135.1-RS_2024_09_03",
        "annotation_date": "2024-09-03",
        "total_gene_count": "2893",
        "protein_coding_gene_count": "2802",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-24",
    "dateModified": "2016-10-24",
    "datePublished": "2016-10-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrosospira multiformis ATCC 25196"
        ],
        "sample_taxid": [
            "323848"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.904 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3157522",
        "Number of Sequences": "72",
        "Longest Sequences (bp)": "325935",
        "N50 (bp)": "108166",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.8",
        "Number of CDSs": "2789",
        "Average Protein Length": "315.6",
        "Coding Ratio (%)": "83.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nitrosospira multiformis",
                "strain": "strain=ATCC 25196",
                "accession": "GCA_000196355.1",
                "taxid": 1231,
                "species_taxid": 1231,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9915,
                "matched_fragments": 1016,
                "total_fragments": 1017,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Nitrosospira lacus",
                "strain": "strain=APG3",
                "accession": "GCA_000355765.4",
                "taxid": 1288494,
                "species_taxid": 1288494,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4541,
                "matched_fragments": 221,
                "total_fragments": 1017,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosospira briensis",
                "strain": "strain=C-128",
                "accession": "GCA_000619905.2",
                "taxid": 35799,
                "species_taxid": 35799,
                "relation_to_type": "reftype",
                "validated": true,
                "ani": 77.2646,
                "matched_fragments": 263,
                "total_fragments": 1017,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000196355.1",
                "gtdb_species": "s__Nitrosospira multiformis",
                "ani": 99.9915,
                "matched_fragments": 1016,
                "total_fragments": 1017,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.45",
                "min_intra_species_ani": "98.91",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900111585.1",
                "gtdb_species": "s__Nitrosospira multiformis_B",
                "ani": 93.6956,
                "matched_fragments": 896,
                "total_fragments": 1017,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900110185.1",
                "gtdb_species": "s__Nitrosospira multiformis_A",
                "ani": 93.2475,
                "matched_fragments": 877,
                "total_fragments": 1017,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003268875.1",
                "gtdb_species": "s__Nitrosospira multiformis_E",
                "ani": 91.1068,
                "matched_fragments": 869,
                "total_fragments": 1017,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.99",
                "min_intra_species_ani": "96.55",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_017306155.1",
                "gtdb_species": "s__Nitrosospira multiformis_F",
                "ani": 89.268,
                "matched_fragments": 828,
                "total_fragments": 1017,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 27.5,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 3286042.882,
        "gc_content": 51.375,
        "coding_genes": 2816.0,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 43.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Nitrosospira",
        "multiformis",
        "ATCC",
        "25196"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}