{
    "type": "genome",
    "identifier": "GCF_900108145.1",
    "organism": "Legionella quinlivanii DSM 21216",
    "title": "Legionella quinlivanii DSM 21216",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900108145.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02746093",
        "wgs_master": "FNVH00000000.1",
        "refseq_category": "na",
        "taxid": "1122167",
        "species_taxid": "45073",
        "organism_name": "Legionella quinlivanii DSM 21216",
        "infraspecific_name": "strain=DSM 21216",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/24",
        "asm_name": "IMG-taxon 2599185259 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900108145.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/108/145/GCF_900108145.1_IMG-taxon_2599185259_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3640000",
        "genome_size_ungapped": "3639385",
        "gc_percent": "43.000000",
        "replicon_count": "0",
        "scaffold_count": "44",
        "contig_count": "44",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-26",
        "total_gene_count": "3168",
        "protein_coding_gene_count": "3079",
        "non_coding_gene_count": "47",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-24",
    "dateModified": "2016-10-24",
    "datePublished": "2016-10-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Legionella quinlivanii DSM 21216"
        ],
        "sample_taxid": [
            "1122167"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Australia:South Australia"
        ],
        "sample_host_location_id": [],
        "data_size": "1.039 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3640000",
        "Number of Sequences": "44",
        "Longest Sequences (bp)": "488803",
        "N50 (bp)": "288319",
        "Gap Ratio (%)": "0.016896",
        "GCcontent (%)": "42.9",
        "Number of CDSs": "3070",
        "Average Protein Length": "351.6",
        "Coding Ratio (%)": "89.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Legionella quinlivanii",
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                "accession": "GCA_900108145.1",
                "taxid": 45073,
                "species_taxid": 45073,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1186,
                "total_fragments": 1189,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Legionella quinlivanii",
                "strain": "strain=NCTC12433",
                "accession": "GCA_900461555.1",
                "taxid": 45073,
                "species_taxid": 45073,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9737,
                "matched_fragments": 1161,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Legionella quinlivanii",
                "strain": "strain=CDC#1442-AUS-E",
                "accession": "GCA_001467975.1",
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                "species_taxid": 45073,
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                "validated": true,
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                "status": "conclusive"
            },
            {
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                "species_taxid": 45073,
                "relation_to_type": "type",
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                "ani": 99.9461,
                "matched_fragments": 1153,
                "total_fragments": 1189,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Legionella birminghamensis",
                "strain": "strain=1407-AL-H",
                "accession": "GCA_900639775.1",
                "taxid": 28083,
                "species_taxid": 28083,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3708,
                "matched_fragments": 577,
                "total_fragments": 1189,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_900461555.1",
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            },
            {
                "accession": "GCF_003265995.1",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900452515.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_C",
                "ani_circumscription_radius": 95.0,
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            {
                "accession": "GCF_000756815.1",
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                "ani_circumscription_radius": 95.0,
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            },
            {
                "accession": "GCF_000953635.1",
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                "ani": 77.2233,
                "matched_fragments": 64,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia",
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                "accession": "GCF_001468125.1",
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            {
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        ]
    },
    "_bac2feature": {
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        "gc_content": 38.268,
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        "rRNA16S_genes": 3.5,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "quinlivanii",
        "DSM",
        "21216"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}