{
    "type": "genome",
    "identifier": "GCF_900108185.1",
    "organism": "Bryocella elongata",
    "title": "Bryocella elongata",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900108185.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05421819",
        "wgs_master": "FNVA00000000.1",
        "refseq_category": "reference genome",
        "taxid": "863522",
        "species_taxid": "863522",
        "organism_name": "Bryocella elongata",
        "infraspecific_name": "strain=DSM 22489",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/24",
        "asm_name": "IMG-taxon 2684622995 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900108185.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/108/185/GCF_900108185.1_IMG-taxon_2684622995_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5669524",
        "genome_size_ungapped": "5669524",
        "gc_percent": "62.000000",
        "replicon_count": "0",
        "scaffold_count": "16",
        "contig_count": "16",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900108185.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "4555",
        "protein_coding_gene_count": "4475",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-24",
    "dateModified": "2016-10-24",
    "datePublished": "2016-10-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bryocella elongata"
        ],
        "sample_taxid": [
            "863522"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.588 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5669524",
        "Number of Sequences": "16",
        "Longest Sequences (bp)": "1652683",
        "N50 (bp)": "661247",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.0",
        "Number of CDSs": "4586",
        "Average Protein Length": "363.8",
        "Coding Ratio (%)": "88.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Bryocella elongata",
                "strain": "strain=DSM 22489",
                "accession": "GCA_900108185.1",
                "taxid": 863522,
                "species_taxid": 863522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1882,
                "total_fragments": 1882,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Granulicella mallensis",
                "strain": "strain=MP5ACTX8",
                "accession": "GCA_000178955.2",
                "taxid": 940614,
                "species_taxid": 940614,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4096,
                "matched_fragments": 406,
                "total_fragments": 1882,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Granulicella rosea",
                "strain": "strain=DSM 18704",
                "accession": "GCA_900188085.1",
                "taxid": 474952,
                "species_taxid": 474952,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2976,
                "matched_fragments": 343,
                "total_fragments": 1882,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Edaphobacter aggregans",
                "strain": "strain=DSM 19364",
                "accession": "GCA_000745965.1",
                "taxid": 570835,
                "species_taxid": 570835,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.115,
                "matched_fragments": 289,
                "total_fragments": 1882,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Granulicella sibirica",
                "strain": "strain=AF10",
                "accession": "GCA_004115155.1",
                "taxid": 2479048,
                "species_taxid": 2479048,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9376,
                "matched_fragments": 241,
                "total_fragments": 1882,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Edaphobacter flagellatus",
                "strain": "strain=HZ411",
                "accession": "GCA_025264665.1",
                "taxid": 1933044,
                "species_taxid": 1933044,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8463,
                "matched_fragments": 225,
                "total_fragments": 1882,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Edaphobacter acidisoli",
                "strain": "strain=CGMCC 1.15447",
                "accession": "GCA_014642855.1",
                "taxid": 2040573,
                "species_taxid": 2040573,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8011,
                "matched_fragments": 215,
                "total_fragments": 1882,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Granulicella tundricola",
                "strain": "strain=MP5ACTX9",
                "accession": "GCA_000178975.2",
                "taxid": 940615,
                "species_taxid": 940615,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7278,
                "matched_fragments": 272,
                "total_fragments": 1882,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Terriglobus saanensis",
                "strain": "strain=SP1PR4",
                "accession": "GCA_000179915.2",
                "taxid": 870903,
                "species_taxid": 870903,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7256,
                "matched_fragments": 186,
                "total_fragments": 1882,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Granulicella pectinivorans",
                "strain": "strain=DSM 21001",
                "accession": "GCA_900114625.1",
                "taxid": 474950,
                "species_taxid": 474950,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6495,
                "matched_fragments": 306,
                "total_fragments": 1882,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Edaphobacter lichenicola",
                "strain": "strain=DSM 104462",
                "accession": "GCA_025264645.1",
                "taxid": 2051959,
                "species_taxid": 2051959,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.5315,
                "matched_fragments": 203,
                "total_fragments": 1882,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Silvibacterium dinghuense",
                "strain": "strain=CGMCC 1.13007",
                "accession": "GCA_014640355.1",
                "taxid": 1560006,
                "species_taxid": 1560006,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3343,
                "matched_fragments": 206,
                "total_fragments": 1882,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Silvibacterium dinghuense",
                "strain": "strain=DHOF10",
                "accession": "GCA_004123295.1",
                "taxid": 1560006,
                "species_taxid": 1560006,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3257,
                "matched_fragments": 207,
                "total_fragments": 1882,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Terracidiphilus gabretensis",
                "strain": "strain=S55",
                "accession": "GCA_001449115.1",
                "taxid": 1577687,
                "species_taxid": 1577687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2888,
                "matched_fragments": 127,
                "total_fragments": 1882,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arenimonas terrae",
                "strain": "strain=R29",
                "accession": "GCA_006265115.1",
                "taxid": 2546226,
                "species_taxid": 2546226,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4148,
                "matched_fragments": 60,
                "total_fragments": 1882,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900108185.1",
                "gtdb_species": "s__Bryocella elongata",
                "ani": 100.0,
                "matched_fragments": 1882,
                "total_fragments": 1882,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Bryocella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014083945.1",
                "gtdb_species": "s__UBA5172 sp014083945",
                "ani": 78.9017,
                "matched_fragments": 410,
                "total_fragments": 1882,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__UBA5172",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000178955.2",
                "gtdb_species": "s__Granulicella_A mallensis",
                "ani": 78.4092,
                "matched_fragments": 406,
                "total_fragments": 1882,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Granulicella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903873705.1",
                "gtdb_species": "s__CAIQPK01 sp903873705",
                "ani": 78.3821,
                "matched_fragments": 352,
                "total_fragments": 1882,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__CAIQPK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.92",
                "min_intra_species_ani": "99.91",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_014203225.1",
                "gtdb_species": "s__Granulicella_A mallensis_A",
                "ani": 78.372,
                "matched_fragments": 419,
                "total_fragments": 1882,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Granulicella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900188085.1",
                "gtdb_species": "s__Granulicella_C rosea",
                "ani": 78.2888,
                "matched_fragments": 343,
                "total_fragments": 1882,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Granulicella_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903970395.1",
                "gtdb_species": "s__UBA5172 sp903970395",
                "ani": 78.2609,
                "matched_fragments": 334,
                "total_fragments": 1882,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__UBA5172",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003138795.1",
                "gtdb_species": "s__UBA5172 sp003138795",
                "ani": 78.181,
                "matched_fragments": 271,
                "total_fragments": 1882,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__UBA5172",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.74",
                "min_intra_species_ani": "99.67",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_009765785.1",
                "gtdb_species": "s__UBA5172 sp009765785",
                "ani": 78.1768,
                "matched_fragments": 284,
                "total_fragments": 1882,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__UBA5172",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000421065.1",
                "gtdb_species": "s__Edaphobacter sp000421065",
                "ani": 78.1063,
                "matched_fragments": 280,
                "total_fragments": 1882,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Edaphobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018449715.1",
                "gtdb_species": "s__Edaphobacter sp018449715",
                "ani": 78.0309,
                "matched_fragments": 262,
                "total_fragments": 1882,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Edaphobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002413385.1",
                "gtdb_species": "s__UBA5172 sp002413385",
                "ani": 77.9858,
                "matched_fragments": 205,
                "total_fragments": 1882,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__UBA5172",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.24",
                "min_intra_species_ani": "98.24",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003132145.1",
                "gtdb_species": "s__Palsa-288 sp003132145",
                "ani": 77.5028,
                "matched_fragments": 210,
                "total_fragments": 1882,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Palsa-288",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.75",
                "min_intra_species_ani": "99.72",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903970445.1",
                "gtdb_species": "s__Tous-C9LFEB sp903970445",
                "ani": 77.2033,
                "matched_fragments": 220,
                "total_fragments": 1882,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Tous-C9LFEB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003166955.1",
                "gtdb_species": "s__Palsa-343 sp003166955",
                "ani": 76.6999,
                "matched_fragments": 125,
                "total_fragments": 1882,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Palsa-343",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.89",
                "min_intra_species_ani": "99.89",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903842065.1",
                "gtdb_species": "s__Terracidiphilus sp903842065",
                "ani": 76.6066,
                "matched_fragments": 129,
                "total_fragments": 1882,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Terracidiphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003132325.1",
                "gtdb_species": "s__Bog-209 sp003132325",
                "ani": 75.4614,
                "matched_fragments": 70,
                "total_fragments": 1882,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__SbA1;g__Bog-209",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "96.57",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": 0.23,
        "doubling_h": 1.491,
        "growth_tmp": 21.0,
        "optimum_tmp": 22.0,
        "optimum_ph": 4.95,
        "genome_size": 5669524.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Bryocella",
        "elongata"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}