{ "type": "genome", "identifier": "GCF_900108315.1", "organism": "Saccharopolyspora kobensis", "title": "Saccharopolyspora kobensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900108315.1", "bioproject": "PRJNA224116", "biosample": "SAMN02982929", "wgs_master": "FNVB00000000.1", "refseq_category": "na", "taxid": "146035", "species_taxid": "146035", "organism_name": "Saccharopolyspora kobensis", "infraspecific_name": "strain=ATCC 20501", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/24", "asm_name": "IMG-taxon 2597490365 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900108315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/108/315/GCF_900108315.1_IMG-taxon_2597490365_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7744048", "genome_size_ungapped": "7739726", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-09-16", "total_gene_count": "7253", "protein_coding_gene_count": "7149", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-24", "dateModified": "2016-10-24", "datePublished": "2016-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Saccharopolyspora hirsuta" ], "sample_taxid": [ "1837" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Kobe City, Hyogo Pref., Japan" ], "sample_host_location_id": [], "data_size": "2.062 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7744048", "Number of Sequences": "27", "Longest Sequences (bp)": "1906593", "N50 (bp)": "729242", "Gap Ratio (%)": "0.055811", "GCcontent (%)": "70.9", "Number of CDSs": "7242", "Average Protein Length": "314.8", "Coding Ratio (%)": "88.3", "Number of rRNAs": "6", "Number of tRNAs": "66", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Saccharopolyspora kobensis", "strain": "strain=ATCC 20501", "accession": "GCA_900108315.1", "taxid": 146035, "species_taxid": 146035, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2568, "total_fragments": 2569, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Saccharopolyspora antimicrobica", "strain": "strain=DSM 45119", "accession": "GCA_003635025.1", "taxid": 455193, "species_taxid": 455193, "relation_to_type": "type", "validated": true, "ani": 96.3317, "matched_fragments": 2376, "total_fragments": 2569, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Saccharopolyspora hirsuta", "strain": "strain=VKM Ac-666", "accession": "GCA_008630535.1", "taxid": 1837, "species_taxid": 1837, "relation_to_type": "type", "validated": true, "ani": 90.8534, "matched_fragments": 1983, "total_fragments": 2569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora hordei", "strain": "strain=DSM 44065", "accession": "GCA_013410345.1", "taxid": 1838, 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"s__Saccharopolyspora sp004348445", "ani": 82.808, "matched_fragments": 1247, "total_fragments": 2569, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007829955.1", "gtdb_species": "s__Saccharopolyspora dendranthemae", "ani": 82.5523, "matched_fragments": 1277, "total_fragments": 2569, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 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