{ "type": "genome", "identifier": "GCF_900108405.1", "organism": "Paracoccus alkenifer", "title": "Paracoccus alkenifer", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900108405.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488075", "wgs_master": "FNXG00000000.1", "refseq_category": "reference genome", "taxid": "65735", "species_taxid": "65735", "organism_name": "Paracoccus alkenifer", "infraspecific_name": "strain=DSM 11593", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/27", "asm_name": "IMG-taxon 2617270733 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900108405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/108/405/GCF_900108405.1_IMG-taxon_2617270733_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3191900", "genome_size_ungapped": "3191900", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900108405.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3097", "protein_coding_gene_count": "3004", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-27", "dateModified": "2016-10-27", "datePublished": "2016-10-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccus alkenifer" ], "sample_taxid": [ "65735" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.865 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3191900", "Number of Sequences": "19", "Longest Sequences (bp)": "877387", "N50 (bp)": "871604", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.3", "Number of CDSs": "3025", "Average Protein Length": "317.5", "Coding Ratio (%)": "90.3", "Number of rRNAs": "9", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paracoccus alkenifer", "strain": "strain=DSM 11593", "accession": "GCA_900108405.1", "taxid": 65735, "species_taxid": 65735, 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1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus contaminans", "strain": "strain=RKI 16-01929T=LMG 29738T=CCM 8701T=CIP 111112T", "accession": "GCA_002105555.1", "taxid": 1945662, "species_taxid": 1945662, "relation_to_type": "type", "validated": true, "ani": 81.7285, "matched_fragments": 592, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus versutus", "strain": "strain=DSM 582", "accession": "GCA_000763885.1", "taxid": 34007, "species_taxid": 34007, "relation_to_type": "type", "validated": true, "ani": 81.576, "matched_fragments": 650, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus mutanolyticus", "strain": "strain=RSP-02", "accession": "GCA_003285265.1", "taxid": 1499308, "species_taxid": 1499308, "relation_to_type": "type", "validated": true, "ani": 80.5752, "matched_fragments": 562, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus shandongensis", "strain": "strain=wg2", "accession": "GCA_017315735.1", "taxid": 2816048, "species_taxid": 2816048, "relation_to_type": "type", "validated": true, "ani": 80.1842, "matched_fragments": 540, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus nototheniae", "strain": "strain=I-41R45", "accession": "GCA_004335005.1", "taxid": 2489002, "species_taxid": 2489002, "relation_to_type": "type", "validated": true, "ani": 79.7598, "matched_fragments": 479, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus salsus", "strain": "strain=EGI L200073", "accession": "GCA_021556615.1", "taxid": 2911061, "species_taxid": 2911061, "relation_to_type": "type", "validated": true, "ani": 78.9571, "matched_fragments": 458, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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