{ "type": "genome", "identifier": "GCF_900108955.1", "organism": "Flavobacterium terrigena", "title": "Flavobacterium terrigena", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900108955.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660918", "wgs_master": "FNYA00000000.1", "refseq_category": "reference genome", "taxid": "402734", "species_taxid": "402734", "organism_name": "Flavobacterium terrigena", "infraspecific_name": "strain=DSM 17934", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/31", "asm_name": "IMG-taxon 2600255390 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900108955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/108/955/GCF_900108955.1_IMG-taxon_2600255390_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3172415", "genome_size_ungapped": "3171715", "gc_percent": "31.000000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900108955.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "2890", "protein_coding_gene_count": "2833", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-31", "dateModified": "2016-10-31", "datePublished": "2016-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium terrigena" ], "sample_taxid": [ "402734" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Dokdo" ], "sample_host_location_id": [], "data_size": "0.871 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3172415", "Number of Sequences": "18", "Longest Sequences (bp)": "742471", "N50 (bp)": "283557", "Gap Ratio (%)": "0.022065", "GCcontent (%)": "31.2", "Number of CDSs": "2830", "Average Protein Length": "336.9", "Coding Ratio (%)": "90.2", "Number of rRNAs": "2", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium terrigena", "strain": "strain=DSM 17934", "accession": 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"relation_to_type": "type", "validated": true, "ani": 79.1725, "matched_fragments": 379, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 78.9627, "matched_fragments": 395, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cyclinae", "strain": "strain=KSM-R2A25", "accession": "GCA_021172145.1", "taxid": 2895947, "species_taxid": 2895947, "relation_to_type": "type", "validated": true, "ani": 78.8996, "matched_fragments": 354, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium indicum", "strain": "strain=GPTSA100-9", "accession": "GCA_000455605.1", "taxid": 312277, "species_taxid": 312277, "relation_to_type": "type", "validated": true, "ani": 78.754, "matched_fragments": 418, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sediminilitoris", "strain": "strain=YSM-43", "accession": "GCA_023008245.1", "taxid": 2024526, "species_taxid": 2024526, "relation_to_type": "type", "validated": true, "ani": 78.0088, "matched_fragments": 294, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium profundi", "strain": "strain=TP390", "accession": "GCA_009753805.1", "taxid": 1774945, "species_taxid": 1774945, "relation_to_type": "type", "validated": true, "ani": 77.8514, "matched_fragments": 283, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 77.6648, "matched_fragments": 238, 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_011305415.1", "gtdb_species": "s__Flavobacterium bernardetii", "ani": 88.3606, "matched_fragments": 789, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001800945.1", "gtdb_species": "s__Flavobacterium sp001800945", "ani": 86.1278, "matched_fragments": 464, "total_fragments": 1049, "gtdb_taxonomy": 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