{
    "type": "genome",
    "identifier": "GCF_900109225.1",
    "organism": "Propionispira arboris",
    "title": "Propionispira arboris",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900109225.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05660742",
        "wgs_master": "FNZK00000000.1",
        "refseq_category": "reference genome",
        "taxid": "84035",
        "species_taxid": "84035",
        "organism_name": "Propionispira arboris",
        "infraspecific_name": "strain=DSM 2179",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/31",
        "asm_name": "IMG-taxon 2602042026 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900109225.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/109/225/GCF_900109225.1_IMG-taxon_2602042026_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4261607",
        "genome_size_ungapped": "4261607",
        "gc_percent": "38.000000",
        "replicon_count": "0",
        "scaffold_count": "40",
        "contig_count": "40",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900109225.1-RS_2024_05_03",
        "annotation_date": "2024-05-03",
        "total_gene_count": "4094",
        "protein_coding_gene_count": "3965",
        "non_coding_gene_count": "88",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-31",
    "dateModified": "2016-10-31",
    "datePublished": "2016-10-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Propionispira arboris DSM 2179"
        ],
        "sample_taxid": [
            "1123002"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:Columbus, Wisconsin"
        ],
        "sample_host_location_id": [],
        "data_size": "1.205 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4261607",
        "Number of Sequences": "40",
        "Longest Sequences (bp)": "422799",
        "N50 (bp)": "150889",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.0",
        "Number of CDSs": "3995",
        "Average Protein Length": "306.3",
        "Coding Ratio (%)": "86.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "73",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Propionispira arboris",
                "strain": "strain=DSM 2179",
                "accession": "GCA_900109225.1",
                "taxid": 84035,
                "species_taxid": 84035,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1393,
                "total_fragments": 1400,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Propionispira raffinosivorans",
                "strain": "strain=DSM 20765",
                "accession": "GCA_000381065.1",
                "taxid": 86959,
                "species_taxid": 86959,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.4527,
                "matched_fragments": 1146,
                "total_fragments": 1400,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pectinatus brassicae",
                "strain": "strain=MB591",
                "accession": "GCA_015732205.1",
                "taxid": 862415,
                "species_taxid": 862415,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2259,
                "matched_fragments": 63,
                "total_fragments": 1400,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectinatus brassicae",
                "strain": "strain=DSM 24661",
                "accession": "GCA_014201835.1",
                "taxid": 862415,
                "species_taxid": 862415,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9955,
                "matched_fragments": 61,
                "total_fragments": 1400,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900109225.1",
                "gtdb_species": "s__Propionispira arboris",
                "ani": 100.0,
                "matched_fragments": 1392,
                "total_fragments": 1400,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Propionispira",
                "ani_circumscription_radius": 96.4486,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_000381065.1",
                "gtdb_species": "s__Propionispira raffinosivorans",
                "ani": 96.4699,
                "matched_fragments": 1145,
                "total_fragments": 1400,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Propionispira",
                "ani_circumscription_radius": 96.4486,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "inconclusive"
            },
            {
                "accession": "GCA_902363205.1",
                "gtdb_species": "s__CABIZH01 sp902363205",
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                "matched_fragments": 102,
                "total_fragments": 1400,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Massilibacillaceae;g__CABIZH01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.61",
                "min_intra_species_ani": "97.54",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_014201835.1",
                "gtdb_species": "s__Pectinatus brassicae",
                "ani": 76.9955,
                "matched_fragments": 61,
                "total_fragments": 1400,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Pectinatus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002319815.1",
                "gtdb_species": "s__UBA1799 sp002319815",
                "ani": 76.7097,
                "matched_fragments": 54,
                "total_fragments": 1400,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__UBA1799",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.845,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 32.5,
        "optimum_ph": null,
        "genome_size": 4261607.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 1.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Propionispira",
        "arboris"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}