{ "type": "genome", "identifier": "GCF_900109355.1", "organism": "Nonomuraea pusilla", "title": "Nonomuraea pusilla", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900109355.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660976", "wgs_master": "FOBF00000000.1", "refseq_category": "na", "taxid": "46177", "species_taxid": "46177", "organism_name": "Nonomuraea pusilla", "infraspecific_name": "strain=DSM 43357", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/31", "asm_name": "IMG-taxon 2599185218 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900109355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/109/355/GCF_900109355.1_IMG-taxon_2599185218_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9204326", "genome_size_ungapped": "9198574", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "66", "contig_count": "66", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900109355.1-RS_2024_03_24", "annotation_date": "2024-03-24", "total_gene_count": "8592", "protein_coding_gene_count": "8441", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-31", "dateModified": "2016-10-31", "datePublished": "2016-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Nonomuraea pusilla" ], "sample_taxid": [ "46177" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "2.447 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.07, "contamination": 6.6, "strain_heterogeneity": 60.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9204326", "Number of Sequences": "66", "Longest Sequences (bp)": "673642", "N50 (bp)": "299537", "Gap Ratio (%)": "0.062492", "GCcontent (%)": "72.4", "Number of CDSs": "8651", "Average Protein Length": "316.9", "Coding Ratio (%)": "89.4", "Number of rRNAs": "3", "Number of tRNAs": "76", "Number of CRISPRs": "9" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nonomuraea pusilla", "strain": "strain=DSM 43357", "accession": "GCA_900109355.1", "taxid": 46177, "species_taxid": 46177, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=WYY166", "accession": "GCA_009497075.1", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 83.649, "matched_fragments": 1910, "total_fragments": 3035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=PA1-10", "accession": "GCA_006334985.2", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 83.6004, "matched_fragments": 1916, "total_fragments": 3035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea angiospora", "strain": "strain=DSM 43173", "accession": "GCA_014873145.1", "taxid": 46172, "species_taxid": 46172, "relation_to_type": "type", "validated": true, "ani": 83.5816, "matched_fragments": 2012, "total_fragments": 3035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea jabiensis", "strain": "strain=DSM 45507", "accession": "GCA_014204795.1", "taxid": 882448, "species_taxid": 882448, "relation_to_type": "type", "validated": true, "ani": 83.5514, "matched_fragments": 2007, "total_fragments": 3035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rhizosphaerae", "strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 83.5469, "matched_fragments": 1165, "total_fragments": 3035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 83.51, "matched_fragments": 1882, "total_fragments": 3035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rubra", "strain": "strain=DSM 43768", "accession": "GCA_014207985.1", "taxid": 46180, "species_taxid": 46180, "relation_to_type": "type", "validated": true, "ani": 83.4955, "matched_fragments": 2052, "total_fragments": 3035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea basaltis", "strain": "strain=160415", "accession": "GCA_005893125.1", "taxid": 2495887, "species_taxid": 2495887, "relation_to_type": "type", "validated": true, "ani": 83.2777, "matched_fragments": 1830, "total_fragments": 3035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea polychroma", "strain": "strain=DSM 43925", "accession": "GCA_004011505.1", "taxid": 46176, "species_taxid": 46176, "relation_to_type": "type", "validated": true, "ani": 83.2725, "matched_fragments": 1834, "total_fragments": 3035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea jiangxiensis", "strain": "strain=CGMCC 4.6533", "accession": "GCA_900099965.1", "taxid": 633440, "species_taxid": 633440, "relation_to_type": "type", "validated": true, "ani": 83.1758, "matched_fragments": 1846, "total_fragments": 3035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea harbinensis", "strain": "strain=CGMCC 4.7106", "accession": "GCA_019396385.1", "taxid": 1286938, "species_taxid": 1286938, "relation_to_type": "type", "validated": true, "ani": 82.8434, "matched_fragments": 1729, "total_fragments": 3035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea aurantiaca", "strain": "strain=NEAU-L178", "accession": "GCA_020215705.1", "taxid": 2878562, "species_taxid": 2878562, "relation_to_type": "type", "validated": true, "ani": 82.7099, "matched_fragments": 1828, "total_fragments": 3035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microtetraspora malaysiensis", "strain": "strain=NBRC 100735", "accession": "GCA_001528665.1", "taxid": 161358, 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