{ "type": "genome", "identifier": "GCF_900109575.1", "organism": "Olivibacter domesticus", "title": "Olivibacter domesticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900109575.1", "bioproject": "PRJNA224116", "biosample": "SAMN05661044", "wgs_master": "FOAF00000000.1", "refseq_category": "reference genome", "taxid": "407022", "species_taxid": "407022", "organism_name": "Olivibacter domesticus", "infraspecific_name": "strain=DSM 18733", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/31", "asm_name": "IMG-taxon 2599185177 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900109575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/109/575/GCF_900109575.1_IMG-taxon_2599185177_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6780495", "genome_size_ungapped": "6779698", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900109575.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "5555", "protein_coding_gene_count": "5488", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-31", "dateModified": "2016-10-31", "datePublished": "2016-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Olivibacter domesticus DSM 18733" ], "sample_taxid": [ "1123028" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Portugal: Porto" ], "sample_host_location_id": [], "data_size": "1.928 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6780495", "Number of Sequences": "23", "Longest Sequences (bp)": "2465563", "N50 (bp)": "946904", "Gap Ratio (%)": "0.011754", "GCcontent (%)": "38.9", "Number of CDSs": "5424", "Average Protein Length": "363.9", "Coding Ratio (%)": "87.3", "Number of rRNAs": "2", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Olivibacter domesticus", "strain": "strain=DSM 18733", "accession": "GCA_900109575.1", "taxid": 407022, "species_taxid": 407022, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2241, "total_fragments": 2248, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingobacterium micropteri", "strain": "strain=DN00404", "accession": "GCA_014692515.1", "taxid": 2763501, "species_taxid": 2763501, "relation_to_type": "type", "validated": true, "ani": 77.115, "matched_fragments": 56, "total_fragments": 2248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olivibacter sitiensis", "strain": "strain=DSM 17696", "accession": "GCA_000427965.1", "taxid": 376470, "species_taxid": 376470, "relation_to_type": "type", "validated": true, "ani": 76.9648, "matched_fragments": 81, "total_fragments": 2248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium puteale", "strain": "strain=M05W1-28", "accession": "GCA_003627955.1", "taxid": 2420510, "species_taxid": 2420510, "relation_to_type": "type", "validated": true, "ani": 76.6696, "matched_fragments": 71, "total_fragments": 2248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium soli", "strain": "strain=DSM 101679", "accession": "GCA_014138555.1", "taxid": 1914757, "species_taxid": 1914757, "relation_to_type": "type", "validated": true, "ani": 76.4055, "matched_fragments": 54, "total_fragments": 2248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium soli", "strain": "strain=CGMCC 1.15966", "accession": "GCA_014644335.1", "taxid": 1914757, "species_taxid": 1914757, "relation_to_type": "type", "validated": true, "ani": 76.4055, "matched_fragments": 54, "total_fragments": 2248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter panaciterrae", "strain": "strain=LMG 23400", "accession": "GCA_013204795.1", "taxid": 363849, "species_taxid": 363849, "relation_to_type": "type", "validated": true, "ani": 76.268, "matched_fragments": 63, "total_fragments": 2248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter indicus", "strain": "strain=SM1810", "accession": "GCA_003449035.1", "taxid": 2292082, "species_taxid": 2292082, "relation_to_type": "type", "validated": true, "ani": 76.2652, "matched_fragments": 60, "total_fragments": 2248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium deserti", "strain": "strain=ACCC 05744", "accession": "GCA_000757725.1", "taxid": 1229276, "species_taxid": 1229276, "relation_to_type": "type", "validated": true, "ani": 76.1211, "matched_fragments": 52, "total_fragments": 2248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter agri", "strain": "strain=PB92", "accession": "GCA_000258495.1", "taxid": 454586, "species_taxid": 454586, "relation_to_type": "type", "validated": true, "ani": 76.0709, "matched_fragments": 55, "total_fragments": 2248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter soli", "strain": "strain=DSM 18609", "accession": "GCA_900101435.1", "taxid": 390242, "species_taxid": 390242, "relation_to_type": "type", "validated": true, "ani": 75.9541, "matched_fragments": 62, "total_fragments": 2248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter kyungheensis", "strain": "strain=KACC 16221", "accession": "GCA_000812965.1", "taxid": 1069985, "species_taxid": 1069985, "relation_to_type": "type", "validated": true, "ani": 75.9452, "matched_fragments": 60, "total_fragments": 2248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter foliorum", "strain": "strain=LMG 31463", "accession": "GCA_013266735.1", "taxid": 2739058, "species_taxid": 2739058, "relation_to_type": "type", "validated": true, "ani": 75.8667, "matched_fragments": 69, "total_fragments": 2248, "ani_threshold": 95, "status": "below_threshold" }, { 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