{ "type": "genome", "identifier": "GCF_900109675.1", "organism": "Paraburkholderia caballeronis", "title": "Paraburkholderia caballeronis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900109675.1", "bioproject": "PRJNA224116", "biosample": "SAMN05192542", "wgs_master": "FOAJ00000000.1", "refseq_category": "na", "taxid": "416943", "species_taxid": "416943", "organism_name": "Paraburkholderia caballeronis", "infraspecific_name": "strain=LMG 26416", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/31", "asm_name": "IMG-taxon 2651870119 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900109675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/109/675/GCF_900109675.1_IMG-taxon_2651870119_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7066941", "genome_size_ungapped": "7065701", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900109675.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "6326", "protein_coding_gene_count": "6179", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-31", "dateModified": "2016-10-31", "datePublished": "2016-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia caballeronis" ], "sample_taxid": [ "416943" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.904 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7066941", "Number of Sequences": "42", "Longest Sequences (bp)": "770885", "N50 (bp)": "339592", "Gap Ratio (%)": "0.017546", "GCcontent (%)": "67.0", "Number of CDSs": "6226", "Average Protein Length": "323.2", "Coding Ratio (%)": "85.4", "Number of rRNAs": "2", "Number of tRNAs": "58", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia caballeronis", "strain": "strain=LMG 26416", "accession": "GCA_900109675.1", "taxid": 416943, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "strain=LMG 20358", "accession": "GCA_902833085.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 83.0685, "matched_fragments": 1185, "total_fragments": 2338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia dinghuensis", "strain": "strain=DHOA04", "accession": "GCA_003837865.1", "taxid": 2305225, "species_taxid": 2305225, "relation_to_type": "type", "validated": true, "ani": 83.0286, "matched_fragments": 1096, "total_fragments": 2338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia eburnea", "strain": "strain=JCM 18070", "accession": "GCA_002917095.1", "taxid": 1189126, "species_taxid": 1189126, "relation_to_type": "type", "validated": true, "ani": 83.022, "matched_fragments": 1268, "total_fragments": 2338, "ani_threshold": 95, "status": 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