{ "type": "genome", "identifier": "GCF_900109955.1", "organism": "Aliiroseovarius sediminilitoris", "title": "Aliiroseovarius sediminilitoris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900109955.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444851", "wgs_master": "FOJB00000000.1", "refseq_category": "reference genome", "taxid": "1173584", "species_taxid": "1173584", "organism_name": "Aliiroseovarius sediminilitoris", "infraspecific_name": "strain=DSM 29439", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/31", "asm_name": "IMG-taxon 2687453744 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900109955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/109/955/GCF_900109955.1_IMG-taxon_2687453744_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3413458", "genome_size_ungapped": "3413458", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900109955.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3350", "protein_coding_gene_count": "3275", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-31", "dateModified": "2016-10-31", "datePublished": "2016-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Aliiroseovarius sediminilitoris" ], "sample_taxid": [ "1173584" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.959 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3413458", "Number of Sequences": "6", "Longest Sequences (bp)": "3043064", "N50 (bp)": "3043064", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.7", "Number of CDSs": "3347", "Average Protein Length": "309.1", "Coding Ratio (%)": "90.9", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aliiroseovarius sediminilitoris", "strain": "strain=DSM 29439", "accession": "GCA_900109955.1", "taxid": 1173584, "species_taxid": 1173584, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1134, "total_fragments": 1136, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aliiroseovarius zhejiangensis", "strain": "strain=KCTC 42443", "accession": "GCA_014656375.1", "taxid": 1632025, "species_taxid": 1632025, "relation_to_type": "type", "validated": true, "ani": 83.5272, "matched_fragments": 857, "total_fragments": 1136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius marinus", "strain": "strain=A6024", "accession": "GCA_004360145.1", "taxid": 2500159, "species_taxid": 2500159, "relation_to_type": "type", "validated": true, "ani": 79.3941, "matched_fragments": 548, "total_fragments": 1136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius pelagivivens", "strain": "strain=CECT 8811", "accession": "GCA_900302485.1", "taxid": 1639690, 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77.0115, "matched_fragments": 202, "total_fragments": 1136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola aestuarii", "strain": "strain=E2-1", "accession": "GCA_010614805.1", "taxid": 2697319, "species_taxid": 2697319, "relation_to_type": "type", "validated": true, "ani": 76.89, "matched_fragments": 213, "total_fragments": 1136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 76.868, "matched_fragments": 173, "total_fragments": 1136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum veldkampii", "strain": "strain=DSM 11550", "accession": "GCA_004363195.1", "taxid": 33049, "species_taxid": 33049, "relation_to_type": "type", "validated": true, "ani": 76.7621, "matched_fragments": 209, "total_fragments": 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900302485.1", "gtdb_species": "s__Aliiroseovarius pelagivivens", "ani": 79.3671, "matched_fragments": 515, "total_fragments": 1136, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Aliiroseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007004645.1", "gtdb_species": "s__Aliiroseovarius halocynthiae", "ani": 79.057, "matched_fragments": 487, "total_fragments": 1136, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Aliiroseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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