{ "type": "genome", "identifier": "GCF_900110065.1", "organism": "Loktanella fryxellensis", "title": "Loktanella fryxellensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900110065.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488003", "wgs_master": "FOCI00000000.1", "refseq_category": "reference genome", "taxid": "245187", "species_taxid": "245187", "organism_name": "Loktanella fryxellensis", "infraspecific_name": "strain=DSM 16213", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/31", "asm_name": "IMG-taxon 2622736532 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900110065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/110/065/GCF_900110065.1_IMG-taxon_2622736532_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3551153", "genome_size_ungapped": "3550808", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900110065.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3533", "protein_coding_gene_count": "3396", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-31", "dateModified": "2016-10-31", "datePublished": "2016-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Loktanella fryxellensis" ], "sample_taxid": [ "245187" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.974 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3551153", "Number of Sequences": "74", "Longest Sequences (bp)": "503430", "N50 (bp)": "135911", "Gap Ratio (%)": "0.009715", "GCcontent (%)": "66.3", "Number of CDSs": "3427", "Average Protein Length": "309.6", "Coding Ratio (%)": "89.6", "Number of rRNAs": "4", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Loktanella fryxellensis", "strain": "strain=DSM 16213", "accession": "GCA_900110065.1", "taxid": 245187, 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"status": "below_threshold" }, { "organism_name": "Limimaricola soesokkakensis", "strain": "strain=DSM 29956", "accession": "GCA_003014435.1", "taxid": 1343159, "species_taxid": 1343159, "relation_to_type": "type", "validated": true, "ani": 78.4141, "matched_fragments": 396, "total_fragments": 1146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 77.8843, "matched_fragments": 450, "total_fragments": 1146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jannaschia formosa", "strain": "strain=12N15", "accession": "GCA_003340555.1", "taxid": 2259592, "species_taxid": 2259592, "relation_to_type": "type", "validated": true, "ani": 77.8498, "matched_fragments": 382, "total_fragments": 1146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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