{ "type": "genome", "identifier": "GCF_900110125.1", "organism": "Cryobacterium luteum", "title": "Cryobacterium luteum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900110125.1", "bioproject": "PRJNA224116", "biosample": "SAMN05216281", "wgs_master": "FOCN00000000.1", "refseq_category": "na", "taxid": "1424661", "species_taxid": "1424661", "organism_name": "Cryobacterium luteum", "infraspecific_name": "strain=CGMCC 1.11210", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/31", "asm_name": "IMG-taxon 2667527407 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900110125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/110/125/GCF_900110125.1_IMG-taxon_2667527407_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3834069", "genome_size_ungapped": "3834052", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "73", "contig_count": "73", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900110125.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "3683", "protein_coding_gene_count": "3552", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-31", "dateModified": "2016-10-31", "datePublished": "2016-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Cryobacterium luteum" ], "sample_taxid": [ "1424661" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.066 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3834069", "Number of Sequences": "73", "Longest Sequences (bp)": "443745", "N50 (bp)": "174783", "Gap Ratio (%)": "0.000443", "GCcontent (%)": "65.1", "Number of CDSs": "3622", "Average Protein Length": "311.5", "Coding Ratio (%)": "88.3", "Number of rRNAs": "6", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cryobacterium luteum", "strain": "strain=CGMCC 1.11210", "accession": "GCA_900110125.1", 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"status": "below_threshold" }, { "organism_name": "Agromyces marinus", "strain": "strain=DSM 26151", "accession": "GCA_021442325.1", "taxid": 1389020, "species_taxid": 1389020, "relation_to_type": "type", "validated": true, "ani": 77.6416, "matched_fragments": 320, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rathayibacter tanaceti", "strain": "strain=VKM Ac-2596", "accession": "GCA_001634385.1", "taxid": 1671680, "species_taxid": 1671680, "relation_to_type": "type", "validated": true, "ani": 77.4889, "matched_fragments": 249, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microcella putealis", "strain": "strain=CV2", "accession": "GCA_004216575.1", "taxid": 337005, "species_taxid": 337005, "relation_to_type": "type", "validated": true, "ani": 77.2213, "matched_fragments": 230, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 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