{ "type": "genome", "identifier": "GCF_900110135.1", "organism": "Pseudorhodobacter antarcticus", "title": "Pseudorhodobacter antarcticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900110135.1", "bioproject": "PRJNA224116", "biosample": "SAMN05216227", "wgs_master": "FOCO00000000.1", "refseq_category": "reference genome", "taxid": "1077947", "species_taxid": "1077947", "organism_name": "Pseudorhodobacter antarcticus", "infraspecific_name": "strain=CGMCC 1.10836", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/31", "asm_name": "IMG-taxon 2667527436 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900110135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/110/135/GCF_900110135.1_IMG-taxon_2667527436_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3796802", "genome_size_ungapped": "3796792", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "115", "contig_count": "115", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900110135.1-RS_2024_03_12", "annotation_date": "2024-03-12", "total_gene_count": "3859", "protein_coding_gene_count": "3686", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-31", "dateModified": "2016-10-31", "datePublished": "2016-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudorhodobacter antarcticus" ], "sample_taxid": [ "1077947" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.063 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3796802", "Number of Sequences": "115", "Longest Sequences (bp)": "189604", "N50 (bp)": "78507", "Gap Ratio (%)": "0.000263", "GCcontent (%)": "59.2", "Number of CDSs": "3743", "Average Protein Length": "300.0", "Coding Ratio (%)": "88.7", "Number of rRNAs": "5", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudorhodobacter antarcticus", "strain": "strain=CGMCC 1.10836", "accession": "GCA_900110135.1", "taxid": 1077947, "species_taxid": 1077947, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1201, "total_fragments": 1203, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudorhodobacter antarcticus", "strain": "strain=KCTC 23700", "accession": "GCA_001202015.1", "taxid": 1077947, "species_taxid": 1077947, "relation_to_type": "type", "validated": true, "ani": 99.9809, "matched_fragments": 1180, "total_fragments": 1203, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudorhodobacter ferrugineus", "strain": "strain=DSM 5888", "accession": "GCA_000420745.1", "taxid": 77008, "species_taxid": 77008, "relation_to_type": "type", "validated": true, "ani": 80.7487, "matched_fragments": 673, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodobacter wandonensis", "strain": "strain=KCTC 23672", "accession": "GCA_001202035.1", "taxid": 1120568, 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"total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter azotoformans", "strain": "strain=KA25", "accession": "GCA_003050905.1", "taxid": 43057, "species_taxid": 43057, "relation_to_type": "type", "validated": true, "ani": 76.2217, "matched_fragments": 132, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Loktanella atrilutea", "strain": "strain=DSM 29326", "accession": "GCA_900128995.1", "taxid": 366533, "species_taxid": 366533, "relation_to_type": "type", "validated": true, "ani": 76.1199, "matched_fragments": 111, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nioella sediminis", "strain": "strain=JS7-11", "accession": "GCA_001879695.1", "taxid": 1912092, "species_taxid": 1912092, "relation_to_type": "type", "validated": true, "ani": 76.0714, "matched_fragments": 125, "total_fragments": 1203, "ani_threshold": 95, "status": 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"0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.188, "cell_length": 0.243, "doubling_h": null, "growth_tmp": 26.0, "optimum_tmp": 15.0, "optimum_ph": 7.5, "genome_size": 3838911.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pseudorhodobacter", "antarcticus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }