{
    "type": "genome",
    "identifier": "GCF_900110455.1",
    "organism": "Natrinema salifodinae",
    "title": "Natrinema salifodinae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900110455.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05216285",
        "wgs_master": "FOIS00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1202768",
        "species_taxid": "1202768",
        "organism_name": "Natrinema salifodinae",
        "infraspecific_name": "strain=CGMCC 1.12284",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/31",
        "asm_name": "IMG-taxon 2671180170 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900110455.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/110/455/GCF_900110455.1_IMG-taxon_2671180170_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "4272165",
        "genome_size_ungapped": "4269929",
        "gc_percent": "65.500000",
        "replicon_count": "0",
        "scaffold_count": "8",
        "contig_count": "8",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900110455.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "4147",
        "protein_coding_gene_count": "4035",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-31",
    "dateModified": "2016-10-31",
    "datePublished": "2016-10-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Natrinema salifodinae"
        ],
        "sample_taxid": [
            "1202768"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.167 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4272165",
        "Number of Sequences": "8",
        "Longest Sequences (bp)": "1181767",
        "N50 (bp)": "878349",
        "Gap Ratio (%)": "0.052339",
        "GCcontent (%)": "65.4",
        "Number of CDSs": "4070",
        "Average Protein Length": "295.2",
        "Coding Ratio (%)": "84.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Halopiger salifodinae",
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                "relation_to_type": "type",
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            },
            {
                "organism_name": "Halopiger salifodinae",
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                "accession": "GCA_000784335.1",
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                "species_taxid": 1202768,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1384,
                "total_fragments": 1419,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Natrinema amylolyticum",
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                "accession": "GCA_020515625.1",
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                "species_taxid": 2878679,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema versiforme",
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                "accession": "GCA_000337195.1",
                "taxid": 88724,
                "species_taxid": 88724,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7588,
                "matched_fragments": 878,
                "total_fragments": 1419,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema salaciae",
                "strain": "strain=DSM 25055",
                "accession": "GCA_900110865.1",
                "taxid": 1186196,
                "species_taxid": 1186196,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7326,
                "matched_fragments": 944,
                "total_fragments": 1419,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema altunense",
                "strain": "strain=JCM 12890",
                "accession": "GCA_000337155.1",
                "taxid": 222984,
                "species_taxid": 222984,
                "relation_to_type": "type",
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                "ani": 83.0978,
                "matched_fragments": 829,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema pallidum",
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                "accession": "GCA_000337615.1",
                "taxid": 69527,
                "species_taxid": 69527,
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                "ani": 83.0325,
                "matched_fragments": 787,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "species_taxid": 504937,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloterrigena limicola",
                "strain": "strain=JCM 13563",
                "accession": "GCA_000337475.1",
                "taxid": 370323,
                "species_taxid": 370323,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.338,
                "matched_fragments": 715,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_900110455.1",
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            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            {
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            },
            {
                "accession": "GCA_000690595.2",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCF_000731985.1",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}