{
    "type": "genome",
    "identifier": "GCF_900110465.1",
    "organism": "Halogranum amylolyticum",
    "title": "Halogranum amylolyticum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900110465.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04487948",
        "wgs_master": "FODV00000000.1",
        "refseq_category": "reference genome",
        "taxid": "660520",
        "species_taxid": "660520",
        "organism_name": "Halogranum amylolyticum",
        "infraspecific_name": "strain=CGMCC 1.10121",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/17",
        "asm_name": "IMG-taxon 2617270928 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900110465.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/110/465/GCF_900110465.1_IMG-taxon_2617270928_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "5185690",
        "genome_size_ungapped": "5180745",
        "gc_percent": "63.000000",
        "replicon_count": "0",
        "scaffold_count": "61",
        "contig_count": "61",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900110465.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "5318",
        "protein_coding_gene_count": "5029",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-17",
    "dateModified": "2016-11-17",
    "datePublished": "2016-11-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halogranum amylolyticum"
        ],
        "sample_taxid": [
            "660520"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.431 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5185690",
        "Number of Sequences": "61",
        "Longest Sequences (bp)": "623196",
        "N50 (bp)": "192062",
        "Gap Ratio (%)": "0.095359",
        "GCcontent (%)": "62.9",
        "Number of CDSs": "5164",
        "Average Protein Length": "275.8",
        "Coding Ratio (%)": "82.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "64",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Halogranum amylolyticum",
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                "accession": "GCA_900110465.1",
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                "species_taxid": 660520,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1698,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halogranum salarium",
                "strain": "strain=B-1",
                "accession": "GCA_000283335.1",
                "taxid": 693851,
                "species_taxid": 693851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6021,
                "matched_fragments": 1018,
                "total_fragments": 1698,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halogranum rubrum",
                "strain": "strain=CGMCC 1.7738",
                "accession": "GCA_900114455.1",
                "taxid": 553466,
                "species_taxid": 553466,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1000,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halogranum gelatinilyticum",
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                "species_taxid": 660521,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.517,
                "matched_fragments": 816,
                "total_fragments": 1698,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halegenticoccus soli",
                "strain": "strain=SYSU A9-0",
                "accession": "GCA_002844195.1",
                "taxid": 1985678,
                "species_taxid": 1985678,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8415,
                "matched_fragments": 693,
                "total_fragments": 1698,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halogeometricum rufum",
                "strain": "strain=CGMCC 1.7736",
                "accession": "GCA_900112175.1",
                "taxid": 553469,
                "species_taxid": 553469,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3848,
                "matched_fragments": 655,
                "total_fragments": 1698,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900110465.1",
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                "ani": 100.0,
                "matched_fragments": 1690,
                "total_fragments": 1698,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halogranum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900114455.1",
                "gtdb_species": "s__Halogranum rubrum",
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                "matched_fragments": 998,
                "total_fragments": 1698,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halogranum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.00",
                "min_intra_species_ani": "97.00",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900103715.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halogranum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_002844195.1",
                "gtdb_species": "s__Halegenticoccus soli",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halegenticoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004116405.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halegenticoccus",
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                "mean_intra_species_ani": "100.00",
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                "mean_intra_species_af": "1.00",
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            },
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halogeometricum",
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            },
            {
                "accession": "GCF_001469875.2",
                "gtdb_species": "s__Haloferax marisrubri",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax",
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                "mean_intra_species_ani": "95.85",
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.096,
        "doubling_h": null,
        "growth_tmp": 37.0,
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        "genome_size": 5185690.0,
        "gc_content": 62.201,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
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        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 1.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Halogranum",
        "amylolyticum"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}