{ "tc_result": [ { "organism_name": "Pseudomonas zeshuii", "strain": "strain=KACC 15471", "accession": "GCA_900141925.1", "taxid": 1076620, "species_taxid": 1076620, "relation_to_type": "type", "validated": true, "ani": 97.8815, "matched_fragments": 1580, "total_fragments": 1779, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas asuensis", "strain": "strain=JCM 13501", "accession": "GCA_014646755.1", "taxid": 1825787, "species_taxid": 1825787, "relation_to_type": "type", "validated": true, "ani": 85.388, "matched_fragments": 1314, "total_fragments": 1779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas duriflava", "strain": "strain=CGMCC 1.6858", "accession": "GCA_007830155.1", "taxid": 459528, "species_taxid": 459528, "relation_to_type": "type", "validated": true, "ani": 79.4492, "matched_fragments": 619, "total_fragments": 1779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas rhizoryzae", "strain": "strain=RY24", "accession": "GCA_005250615.1", "taxid": 2571129, "species_taxid": 2571129, "relation_to_type": "type", "validated": true, "ani": 78.0178, "matched_fragments": 349, "total_fragments": 1779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas psychrotolerans", "strain": "strain=DSM 15758", "accession": "GCA_900102665.1", "taxid": 237610, "species_taxid": 237610, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9776, "matched_fragments": 360, "total_fragments": 1779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzihabitans", "strain": "strain=NBRC 102199", "accession": "GCA_000730625.1", "taxid": 47885, "species_taxid": 47885, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9024, "matched_fragments": 358, "total_fragments": 1779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas chloritidismutans", "strain": "strain=AW-1", "accession": "GCA_000495915.1", "taxid": 203192, "species_taxid": 203192, "relation_to_type": "type", "validated": true, "ani": 77.8634, "matched_fragments": 228, "total_fragments": 1779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzihabitans", "strain": "strain=DSM 6835", "accession": "GCA_012986195.1", "taxid": 47885, "species_taxid": 47885, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8389, "matched_fragments": 369, "total_fragments": 1779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NCTC10367", "accession": "GCA_900455475.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 77.7311, "matched_fragments": 243, "total_fragments": 1779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas kunmingensis", "strain": "strain=DSM 25974", "accession": "GCA_024397575.1", "taxid": 1211807, "species_taxid": 1211807, "relation_to_type": "type", "validated": true, "ani": 77.6736, "matched_fragments": 226, "total_fragments": 1779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas kunmingensis", "strain": "strain=DSM 25974", "accession": "GCA_900114065.1", "taxid": 1211807, "species_taxid": 1211807, "relation_to_type": "type", "validated": true, "ani": 77.6267, "matched_fragments": 229, "total_fragments": 1779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=JCM 5962", "accession": "GCA_022496575.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 77.5702, "matched_fragments": 268, "total_fragments": 1779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pohangensis", "strain": "strain=DSM 17875", "accession": "GCA_900105995.1", "taxid": 364197, "species_taxid": 364197, "relation_to_type": "type", "validated": true, "ani": 77.5522, "matched_fragments": 169, "total_fragments": 1779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serpens gallinarum", "strain": "strain=Sa2CUA2", "accession": "GCA_014836765.1", "taxid": 2763075, "species_taxid": 2763075, "relation_to_type": "type", "validated": true, "ani": 77.5115, "matched_fragments": 193, "total_fragments": 1779, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002091675.1", "gtdb_species": "s__Pseudomonas_B luteola", "ani": 99.981, "matched_fragments": 1730, "total_fragments": 1779, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.05", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 19, "status": "conclusive" }, { "accession": "GCF_014646755.1", "gtdb_species": "s__Pseudomonas_B asuensis", "ani": 85.3838, "matched_fragments": 1315, "total_fragments": 1779, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007830155.1", "gtdb_species": "s__Pseudomonas_B duriflava", "ani": 79.4492, "matched_fragments": 619, "total_fragments": 1779, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001518815.1", "gtdb_species": "s__Pseudomonas_B oryzihabitans_E", "ani": 78.1201, "matched_fragments": 328, "total_fragments": 1779, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.13", "min_intra_species_ani": "98.08", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001650425.1", "gtdb_species": "s__Pseudomonas_B oryzihabitans_B", "ani": 78.0368, "matched_fragments": 345, "total_fragments": 1779, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.78", "min_intra_species_ani": "97.39", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_001512295.1", "gtdb_species": "s__Pseudomonas_B sp001512295", "ani": 78.0018, "matched_fragments": 342, "total_fragments": 1779, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006384975.1", "gtdb_species": "s__Pseudomonas_B psychrotolerans_B", "ani": 77.9992, "matched_fragments": 361, "total_fragments": 1779, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000730625.1", "gtdb_species": "s__Pseudomonas_B oryzihabitans", "ani": 77.9153, "matched_fragments": 358, "total_fragments": 1779, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.97", "min_intra_species_ani": "96.38", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 28, "status": "-" }, { "accession": "GCF_008807375.1", "gtdb_species": "s__Pseudomonas_F lalkuanensis", "ani": 77.6892, "matched_fragments": 277, "total_fragments": 1779, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_F", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009189165.1", "gtdb_species": "s__Pseudomonas sp009189165", "ani": 77.6357, "matched_fragments": 273, "total_fragments": 1779, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014836765.1", "gtdb_species": "s__Pseudomonas_H sp014836765", "ani": 77.5115, "matched_fragments": 193, "total_fragments": 1779, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_H", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.71", "min_intra_species_ani": "97.71", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900112645.1", "gtdb_species": "s__Pseudomonas_E straminea", "ani": 77.4334, "matched_fragments": 262, "total_fragments": 1779, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.06", "min_intra_species_ani": "98.06", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900104805.1", "gtdb_species": "s__Pseudomonas_K oryzae", "ani": 77.35, "matched_fragments": 218, "total_fragments": 1779, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_K", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000213805.1", "gtdb_species": "s__Pseudomonas_E fulva_B", "ani": 77.3125, "matched_fragments": 257, "total_fragments": 1779, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.53", "min_intra_species_ani": "96.12", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 6, "status": "-" } ] }