{ "type": "genome", "identifier": "GCF_900110885.1", "organism": "Azotobacter beijerinckii", "title": "Azotobacter beijerinckii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900110885.1", "bioproject": "PRJNA224116", "biosample": "SAMN04244573", "wgs_master": "FOFJ00000000.1", "refseq_category": "reference genome", "taxid": "170623", "species_taxid": "170623", "organism_name": "Azotobacter beijerinckii", "infraspecific_name": "strain=DSM 378", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/31", "asm_name": "IMG-taxon 2597490340 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900110885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/110/885/GCF_900110885.1_IMG-taxon_2597490340_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4940163", "genome_size_ungapped": "4936268", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "182", "contig_count": "182", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900110885.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "4776", "protein_coding_gene_count": "4476", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-31", "dateModified": "2016-10-31", "datePublished": "2016-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Azotobacter beijerinckii" ], "sample_taxid": [ "170623" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.366 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4940163", "Number of Sequences": "182", "Longest Sequences (bp)": "224508", "N50 (bp)": "84920", "Gap Ratio (%)": "0.078844", "GCcontent (%)": "65.6", "Number of CDSs": "4470", "Average Protein Length": "310.9", "Coding Ratio (%)": "84.4", "Number of rRNAs": "2", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Azotobacter beijerinckii", "strain": "strain=DSM 378", "accession": "GCA_900110885.1", "taxid": 170623, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas indica", "strain": "strain=NBRC 103045", "accession": "GCA_002091635.1", "taxid": 137658, "species_taxid": 137658, "relation_to_type": "type", "validated": true, "ani": 81.7234, "matched_fragments": 726, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mangiferae", "strain": "strain=DMKU BBB3-04", "accession": "GCA_007109405.1", "taxid": 2593654, "species_taxid": 2593654, "relation_to_type": "type", "validated": true, "ani": 81.6601, "matched_fragments": 668, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900110885.1", "gtdb_species": "s__Azotobacter beijerinckii", "ani": 100.0, "matched_fragments": 1541, "total_fragments": 1550, "gtdb_taxonomy": 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