{
    "type": "genome",
    "identifier": "GCF_900111065.1",
    "organism": "Myroides profundi",
    "title": "Myroides profundi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900111065.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04488089",
        "wgs_master": "FOFY00000000.1",
        "refseq_category": "na",
        "taxid": "480520",
        "species_taxid": "480520",
        "organism_name": "Myroides profundi",
        "infraspecific_name": "strain=DSM 19823",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/31",
        "asm_name": "IMG-taxon 2622736514 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900111065.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/111/065/GCF_900111065.1_IMG-taxon_2622736514_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4004380",
        "genome_size_ungapped": "4000531",
        "gc_percent": "33.500000",
        "replicon_count": "0",
        "scaffold_count": "33",
        "contig_count": "33",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900111065.1-RS_2024_07_25",
        "annotation_date": "2024-07-25",
        "total_gene_count": "3587",
        "protein_coding_gene_count": "3479",
        "non_coding_gene_count": "80",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-31",
    "dateModified": "2016-10-31",
    "datePublished": "2016-10-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Myroides profundi"
        ],
        "sample_taxid": [
            "480520"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.117 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4004380",
        "Number of Sequences": "33",
        "Longest Sequences (bp)": "611796",
        "N50 (bp)": "228571",
        "Gap Ratio (%)": "0.096120",
        "GCcontent (%)": "33.7",
        "Number of CDSs": "3487",
        "Average Protein Length": "326.6",
        "Coding Ratio (%)": "85.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "71",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Myroides profundi",
                "strain": "strain=DSM 19823",
                "accession": "GCA_900111065.1",
                "taxid": 480520,
                "species_taxid": 480520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1313,
                "total_fragments": 1318,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Myroides profundi",
                "strain": "strain=D25",
                "accession": "GCA_000833025.1",
                "taxid": 480520,
                "species_taxid": 480520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9918,
                "matched_fragments": 1316,
                "total_fragments": 1318,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Myroides odoratimimus subsp. xuanwuensis",
                "strain": "strain=DSM 27251",
                "accession": "GCA_900142635.1",
                "taxid": 1324934,
                "species_taxid": 76832,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.0831,
                "matched_fragments": 1183,
                "total_fragments": 1318,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Myroides odoratimimus",
                "strain": "strain=CCUG39352",
                "accession": "GCA_001485415.1",
                "taxid": 76832,
                "species_taxid": 76832,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.9165,
                "matched_fragments": 1139,
                "total_fragments": 1318,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Myroides odoratimimus",
                "strain": "strain=NCTC11180",
                "accession": "GCA_900453765.1",
                "taxid": 76832,
                "species_taxid": 76832,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.8782,
                "matched_fragments": 1165,
                "total_fragments": 1318,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Myroides marinus",
                "strain": "strain=DSM 23048",
                "accession": "GCA_900109075.1",
                "taxid": 703342,
                "species_taxid": 703342,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5052,
                "matched_fragments": 889,
                "total_fragments": 1318,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium jumunjinense",
                "strain": "strain=HME7102",
                "accession": "GCA_021650975.2",
                "taxid": 998845,
                "species_taxid": 998845,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.83,
                "matched_fragments": 102,
                "total_fragments": 1318,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000833025.1",
                "gtdb_species": "s__Flavobacterium profundi",
                "ani": 99.9918,
                "matched_fragments": 1316,
                "total_fragments": 1318,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001485415.1",
                "gtdb_species": "s__Flavobacterium odoratimimum",
                "ani": 94.8906,
                "matched_fragments": 1140,
                "total_fragments": 1318,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "97.00",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCF_900109075.1",
                "gtdb_species": "s__Flavobacterium marinum_A",
                "ani": 83.5401,
                "matched_fragments": 885,
                "total_fragments": 1318,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.64",
                "min_intra_species_ani": "97.56",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_002286775.1",
                "gtdb_species": "s__Flavobacterium sp002286775",
                "ani": 82.5041,
                "matched_fragments": 877,
                "total_fragments": 1318,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009711045.1",
                "gtdb_species": "s__Flavobacterium album_A",
                "ani": 81.3622,
                "matched_fragments": 477,
                "total_fragments": 1318,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.30",
                "min_intra_species_ani": "99.30",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009799805.1",
                "gtdb_species": "s__Flavobacterium phaeum_A",
                "ani": 80.0091,
                "matched_fragments": 464,
                "total_fragments": 1318,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002454195.1",
                "gtdb_species": "s__Flavobacterium sp002454195",
                "ani": 76.9664,
                "matched_fragments": 61,
                "total_fragments": 1318,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.5,
        "cell_length": -0.139,
        "doubling_h": null,
        "growth_tmp": 15.0,
        "optimum_tmp": 32.785,
        "optimum_ph": 7.333,
        "genome_size": 4052502.4,
        "gc_content": 33.8,
        "coding_genes": 3494.333,
        "rRNA16S_genes": 5.0,
        "tRNA_genes": 100.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Myroides",
        "profundi"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}