{ "type": "genome", "identifier": "GCF_900111075.1", "organism": "Flavobacterium frigoris", "title": "Flavobacterium frigoris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900111075.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444355", "wgs_master": "FOFZ00000000.1", "refseq_category": "reference genome", "taxid": "229204", "species_taxid": "229204", "organism_name": "Flavobacterium frigoris", "infraspecific_name": "strain=DSM 15719", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/31", "asm_name": "IMG-taxon 2693429909 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900111075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/111/075/GCF_900111075.1_IMG-taxon_2693429909_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4045707", "genome_size_ungapped": "4045581", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "63", "contig_count": "63", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900111075.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3564", "protein_coding_gene_count": "3467", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-31", "dateModified": "2016-10-31", "datePublished": "2016-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium frigoris" ], "sample_taxid": [ "229204" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "1.135 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4045707", "Number of Sequences": "63", "Longest Sequences (bp)": "725859", "N50 (bp)": "229665", "Gap Ratio (%)": "0.003114", "GCcontent (%)": "34.2", "Number of CDSs": "3472", "Average Protein Length": "330.6", "Coding Ratio (%)": "85.1", "Number of rRNAs": "2", "Number of tRNAs": "45", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium frigoris", "strain": "strain=DSM 15719", "accession": "GCA_900111075.1", "taxid": 229204, "species_taxid": 229204, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1314, "total_fragments": 1314, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium gillisiae", "strain": "strain=DSM 22376", "accession": "GCA_900107635.1", "taxid": 150146, "species_taxid": 150146, "relation_to_type": "type", "validated": true, "ani": 89.247, "matched_fragments": 1005, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hiemivividum", "strain": "strain=TSA-D2", "accession": "GCA_004349145.1", "taxid": 2541734, "species_taxid": 2541734, "relation_to_type": "type", "validated": true, "ani": 83.954, "matched_fragments": 793, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium degerlachei", "strain": "strain=DSM 15718", "accession": "GCA_900106645.1", "taxid": 229203, "species_taxid": 229203, "relation_to_type": "type", "validated": true, "ani": 81.166, "matched_fragments": 670, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium muglaense", "strain": "strain=F-60", "accession": "GCA_014305155.1", "taxid": 2764716, "species_taxid": 2764716, "relation_to_type": "type", "validated": true, "ani": 80.1936, "matched_fragments": 563, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xinjiangense", "strain": "strain=CGMCC 1.2749", "accession": "GCA_900142885.1", "taxid": 178356, "species_taxid": 178356, "relation_to_type": "type", "validated": true, "ani": 79.9825, "matched_fragments": 532, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 79.8181, "matched_fragments": 552, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium urumqiense", "strain": "strain=CGMCC 1.9230", "accession": "GCA_900108015.1", "taxid": 935224, "species_taxid": 935224, "relation_to_type": "type", "validated": true, "ani": 79.6365, "matched_fragments": 557, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium rhamnosiphilum", "strain": "strain=LB3P52", "accession": "GCA_004349195.1", "taxid": 2541724, "species_taxid": 2541724, "relation_to_type": "type", "validated": true, "ani": 79.6175, "matched_fragments": 538, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glaciei", "strain": "strain=DSM 19728", "accession": "GCA_003350545.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 79.5289, "matched_fragments": 492, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium frigidarium", "strain": "strain=DSM 17623", "accession": "GCA_000425505.1", "taxid": 99286, "species_taxid": 99286, "relation_to_type": "type", "validated": true, "ani": 79.5052, "matched_fragments": 478, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flabelliforme", "strain": "strain=P4023", "accession": "GCA_017948675.1", "taxid": 2816119, "species_taxid": 2816119, "relation_to_type": "type", "validated": true, "ani": 79.4794, "matched_fragments": 496, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 78.6851, "matched_fragments": 394, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 78.2664, "matched_fragments": 359, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 78.2486, "matched_fragments": 324, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 78.1062, "matched_fragments": 357, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 76.3246, "matched_fragments": 72, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900111075.1", "gtdb_species": "s__Flavobacterium frigoris", "ani": 100.0, "matched_fragments": 1314, "total_fragments": 1314, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900107635.1", "gtdb_species": "s__Flavobacterium gillisiae", "ani": 89.2326, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "frigoris" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }