{
    "type": "genome",
    "identifier": "GCF_900111095.1",
    "organism": "Amphritea atlantica",
    "title": "Amphritea atlantica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900111095.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03080615",
        "wgs_master": "FOGB00000000.1",
        "refseq_category": "na",
        "taxid": "355243",
        "species_taxid": "355243",
        "organism_name": "Amphritea atlantica",
        "infraspecific_name": "strain=DSM 18887",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/31",
        "asm_name": "IMG-taxon 2599185211 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900111095.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/111/095/GCF_900111095.1_IMG-taxon_2599185211_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4735181",
        "genome_size_ungapped": "4727587",
        "gc_percent": "51.000000",
        "replicon_count": "0",
        "scaffold_count": "32",
        "contig_count": "32",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900111095.1-RS_2024_05_03",
        "annotation_date": "2024-05-03",
        "total_gene_count": "4387",
        "protein_coding_gene_count": "4302",
        "non_coding_gene_count": "64",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-31",
    "dateModified": "2016-10-31",
    "datePublished": "2016-10-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Amphritea atlantica"
        ],
        "sample_taxid": [
            "355243"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Atlantic Ocean:Logatchev hydrothermal vent field at the Mid-Atlantic Ridge"
        ],
        "sample_host_location_id": [],
        "data_size": "1.345 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4735181",
        "Number of Sequences": "32",
        "Longest Sequences (bp)": "712881",
        "N50 (bp)": "276135",
        "Gap Ratio (%)": "0.160374",
        "GCcontent (%)": "51.1",
        "Number of CDSs": "4364",
        "Average Protein Length": "313.9",
        "Coding Ratio (%)": "86.8",
        "Number of rRNAs": "6",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
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            },
            {
                "organism_name": "Amphritea pacifica",
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                "accession": "GCA_016924145.1",
                "taxid": 2811233,
                "species_taxid": 2811233,
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                "status": "below_threshold"
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                "status": "below_threshold"
            },
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                "species_taxid": 452627,
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                "validated": true,
                "ani": 79.1961,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Amphritea japonica",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amphritea japonica",
                "strain": "strain=ATCC BAA-1530",
                "accession": "GCA_016592435.1",
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            },
            {
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                "species_taxid": 452629,
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            },
            {
                "organism_name": "Amphritea ceti",
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            {
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            },
            {
                "organism_name": "Marinobacterium halophilum",
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                "accession": "GCA_003014615.1",
                "taxid": 267374,
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacterium arenosum",
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            },
            {
                "organism_name": "Nitrincola lacisaponensis",
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}