{ "type": "genome", "identifier": "GCF_900111555.1", "organism": "Marinobacter segnicrescens", "title": "Marinobacter segnicrescens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900111555.1", "bioproject": "PRJNA224116", "biosample": "SAMN04487962", "wgs_master": "FOHZ00000000.1", "refseq_category": "reference genome", "taxid": "430453", "species_taxid": "430453", "organism_name": "Marinobacter segnicrescens", "infraspecific_name": "strain=CGMCC 1.6489", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/31", "asm_name": "IMG-taxon 2617270929 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900111555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/111/555/GCF_900111555.1_IMG-taxon_2617270929_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4218891", "genome_size_ungapped": "4216931", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "85", "contig_count": "85", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900111555.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3946", "protein_coding_gene_count": "3835", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-31", "dateModified": "2016-10-31", "datePublished": "2016-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter segnicrescens" ], "sample_taxid": [ "430453" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.196 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4218891", "Number of Sequences": "85", "Longest Sequences (bp)": "601757", "N50 (bp)": "207185", "Gap Ratio (%)": "0.046458", "GCcontent (%)": "59.2", "Number of CDSs": "3892", "Average Protein Length": "319.7", "Coding Ratio (%)": "88.5", "Number of rRNAs": "0", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter segnicrescens", "strain": "strain=CGMCC 1.6489", "accession": "GCA_900111555.1", "taxid": 430453, "species_taxid": 430453, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1360, "total_fragments": 1364, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter bryozoorum", "strain": "strain=DSM 15401", "accession": "GCA_023156245.1", "taxid": 256324, "species_taxid": 256324, "relation_to_type": "type", "validated": true, "ani": 87.4803, "matched_fragments": 1016, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter zhanjiangensis", "strain": "strain=KCTC 22280", "accession": "GCA_014651935.1", "taxid": 578215, "species_taxid": 578215, "relation_to_type": "type", "validated": true, "ani": 81.2699, "matched_fragments": 781, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter daqiaonensis", "strain": "strain=CGMCC 1.9167", "accession": "GCA_900115285.1", "taxid": 650891, "species_taxid": 650891, "relation_to_type": "type", "validated": true, "ani": 80.3758, "matched_fragments": 642, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter daqiaonensis", "strain": "strain=YCSA40", "accession": "GCA_012070355.1", "taxid": 650891, "species_taxid": 650891, "relation_to_type": "type", "validated": true, "ani": 80.3723, "matched_fragments": 647, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter vinifirmus", "strain": "strain=FB1", "accession": "GCA_002258215.1", "taxid": 355591, "species_taxid": 355591, "relation_to_type": "type", "validated": true, "ani": 79.5609, "matched_fragments": 447, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 79.4764, "matched_fragments": 457, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter gudaonensis", "strain": "strain=CGMCC 1.6294", "accession": "GCA_900115175.1", "taxid": 375760, "species_taxid": 375760, "relation_to_type": "type", "validated": true, "ani": 79.1206, "matched_fragments": 388, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis subsp. alexandrii", "strain": "strain=LZ-6", "accession": "GCA_005871095.1", "taxid": 2570350, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 78.9416, "matched_fragments": 385, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 78.6608, "matched_fragments": 345, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter koreensis", "strain": "strain=DSM 17924", "accession": "GCA_023156285.1", "taxid": 335974, "species_taxid": 335974, "relation_to_type": "type", "validated": true, "ani": 78.5912, "matched_fragments": 345, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter santoriniensis", "strain": "strain=NKSG1", "accession": "GCA_000347775.1", "taxid": 523742, "species_taxid": 523742, "relation_to_type": "type", "validated": true, "ani": 78.5628, "matched_fragments": 343, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter lutaoensis", "strain": "strain=T5054", "accession": "GCA_001981305.1", "taxid": 135739, "species_taxid": 135739, "relation_to_type": "type", "validated": true, "ani": 78.4712, "matched_fragments": 400, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter mobilis", "strain": "strain=CGMCC 1.7059", "accession": "GCA_900106945.1", "taxid": 488533, "species_taxid": 488533, "relation_to_type": "type", "validated": true, "ani": 78.2166, "matched_fragments": 303, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 76.4493, "matched_fragments": 143, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lysinitropha", "strain": "strain=3(2)", "accession": "GCA_902500215.1", "taxid": 2607506, "species_taxid": 2607506, "relation_to_type": "type", "validated": true, "ani": 76.3876, "matched_fragments": 114, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 76.0489, "matched_fragments": 70, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900111555.1", "gtdb_species": "s__Marinobacter segnicrescens", "ani": 100.0, "matched_fragments": 1359, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014651935.1", "gtdb_species": "s__Marinobacter zhanjiangensis", "ani": 81.2754, "matched_fragments": 780, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900115285.1", "gtdb_species": "s__Marinobacter daqiaonensis", "ani": 80.385, "matched_fragments": 641, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001447155.2", "gtdb_species": "s__Marinobacter sp001447155", "ani": 79.9336, "matched_fragments": 399, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002258215.1", "gtdb_species": "s__Marinobacter vinifirmus", "ani": 79.5825, "matched_fragments": 447, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.96", "min_intra_species_ani": "96.78", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.84", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_900114925.1", "gtdb_species": "s__Marinobacter pelagius", "ani": 79.4867, "matched_fragments": 456, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003315345.1", "gtdb_species": "s__Marinobacter pelagius_A", "ani": 79.4556, "matched_fragments": 469, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002934325.1", "gtdb_species": "s__Marinobacter persicus_A", "ani": 79.3928, "matched_fragments": 396, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900115175.1", "gtdb_species": "s__Marinobacter gudaonensis", "ani": 79.1086, "matched_fragments": 389, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003007715.1", "gtdb_species": "s__Marinobacter shengliensis", "ani": 79.0281, "matched_fragments": 401, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.96", "min_intra_species_ani": "95.10", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_001045555.1", "gtdb_species": "s__Marinobacter subterrani", "ani": 78.9515, "matched_fragments": 418, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.05", "min_intra_species_ani": "97.05", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018623515.1", "gtdb_species": "s__Marinobacter sp018623515", "ani": 78.9092, "matched_fragments": 383, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000166295.1", "gtdb_species": "s__Marinobacter adhaerens", "ani": 78.6732, "matched_fragments": 370, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 96.6719, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "97.71", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000347775.1", "gtdb_species": "s__Marinobacter santoriniensis", "ani": 78.5628, "matched_fragments": 343, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001981305.1", "gtdb_species": "s__Marinobacter lutaoensis", "ani": 78.4609, "matched_fragments": 401, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.21", "min_intra_species_ani": "99.12", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_900106945.1", "gtdb_species": "s__Marinobacter mobilis", "ani": 78.2166, "matched_fragments": 303, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017301335.1", "gtdb_species": "s__Marinobacter sp017301335", "ani": 78.2052, "matched_fragments": 304, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.188, "cell_length": 0.021, "doubling_h": -0.125, "growth_tmp": 30.29, "optimum_tmp": 33.5, "optimum_ph": 7.75, "genome_size": 4218891.0, "gc_content": 56.678, "coding_genes": 3548.15, "rRNA16S_genes": 2.444, "tRNA_genes": 48.833, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.137, "anaerobic_respiration": 0.034, "aerobic_respiration": 0.827, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 1.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Marinobacter", "segnicrescens" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }