{
    "type": "genome",
    "identifier": "GCF_900111615.1",
    "organism": "Natronincola peptidivorans",
    "title": "Natronincola peptidivorans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900111615.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05660297",
        "wgs_master": "FOHU00000000.1",
        "refseq_category": "reference genome",
        "taxid": "426128",
        "species_taxid": "426128",
        "organism_name": "Natronincola peptidivorans",
        "infraspecific_name": "strain=DSM 18979",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/31",
        "asm_name": "IMG-taxon 2599185224 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900111615.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/111/615/GCF_900111615.1_IMG-taxon_2599185224_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3768981",
        "genome_size_ungapped": "3765008",
        "gc_percent": "35.500000",
        "replicon_count": "0",
        "scaffold_count": "56",
        "contig_count": "56",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900111615.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "3591",
        "protein_coding_gene_count": "3527",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-31",
    "dateModified": "2016-10-31",
    "datePublished": "2016-10-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Natronincola peptidivorans DSM 18979"
        ],
        "sample_taxid": [
            "1122597"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia:Lake Verkhnee Beloe, Buryatia"
        ],
        "sample_host_location_id": [],
        "data_size": "1.053 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3768981",
        "Number of Sequences": "56",
        "Longest Sequences (bp)": "518610",
        "N50 (bp)": "170693",
        "Gap Ratio (%)": "0.105413",
        "GCcontent (%)": "35.5",
        "Number of CDSs": "3519",
        "Average Protein Length": "303.2",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Natronincola peptidivorans",
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                "accession": "GCA_900111615.1",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Anaerovirgula multivorans",
                "strain": "strain=SCA",
                "accession": "GCA_900188145.1",
                "taxid": 312168,
                "species_taxid": 312168,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2662,
                "matched_fragments": 397,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronincola ferrireducens",
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "species_taxid": 1497,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 249,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium aceticum",
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                "accession": "GCA_000949285.1",
                "taxid": 84022,
                "species_taxid": 84022,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 239,
                "total_fragments": 1226,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium formicaceticum",
                "strain": "strain=ATCC 27076",
                "accession": "GCA_001854185.1",
                "taxid": 1497,
                "species_taxid": 1497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7513,
                "matched_fragments": 253,
                "total_fragments": 1226,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium aceticum",
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                "accession": "GCA_001042715.1",
                "taxid": 84022,
                "species_taxid": 84022,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7334,
                "matched_fragments": 241,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkaliphilus hydrothermalis",
                "strain": "strain=DSM 25890",
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                "taxid": 1482730,
                "species_taxid": 1482730,
                "relation_to_type": "type",
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                "ani": 76.5805,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crassaminicella profunda",
                "strain": "strain=Ra1766H",
                "accession": "GCA_019884785.1",
                "taxid": 1286698,
                "species_taxid": 1286698,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8288,
                "matched_fragments": 68,
                "total_fragments": 1226,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_900111615.1",
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                "total_fragments": 1226,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Natronincola_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_900188145.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Anaerovirgula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Natronincola",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Clostridium_W",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Thermotaleaceae;g__Inediibacterium",
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        ]
    },
    "_bac2feature": {
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        "genome_size": 3768981.0,
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        "gram_stain": 1.0,
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        "motility": null,
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        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "peptidivorans"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}